Author: Rakhee Karumbaya

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Title: Climate casualties or human disturbance? Shrinking distribution of the three large carnivores in the Greater Himalaya

Author: Kichloo, M. A., Sharma, K., Sharma, N.

Abstract: Mammalian carnivores are key to our understanding of ecosystem dynamics, but most of them are threatened with extinction all over the world. Conservating large carnivores is often an arduous task considering the complex relationship between humans and carnivores, and the diverse range and reasons of threats they face. Climate change is exacerbating the situation further by interacting with most existing threats and amplifying their impacts. The Mountains of Central and South Asia are warming twice as rapidly as the rest of the northern hemisphere. There has been limited research on the effect of climate change and other variables on large carnivores. We studied the patterns in spatio-temporal distribution of three sympatric carnivores, common leopard, snow leopard, and Asiatic black bear in Kishtwar high altitude National Park, a protected area in the Great Himalayan region of Jammu and Kashmir. We investigated the effects of key habitat characteristics as well as human
disturbance and climatic factors to understand the spatio-temporal change in their distributions between the early 1990s and around the year 2016–2017. We found a marked contraction in the distribution of the three carnivores between the two time periods. While snow leopard shifted upwards and further away from human settlements, common leopard and Asiatic black bear suffered higher rates of local extinctions at higher altitudes and shifted to lower areas with more vegetation, even if that brought them closer to settlements. We also found some evidence that snow leopards were less likely to have faced range contraction in areas with permanent glaciers. Our study underscores the importance of climate adaptive conservation practices for long-term management in the Greater Himalaya, including the monitoring of changes in habitat, and space-use patterns by human communities and wildlife.

URL: https://snowleopardnetwork.org/b/show.php?record=1724

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Title: Comparison of two individual identification algorithms for snow leopards (Panthera uncia) after automated detection

Author: Bohnett, E., Holmberg, J., Faryabi, S. P., An, L., Ahmad, B., Rashid, W., Ostrowski, S.

Abstract: Photo-identification of individual snow leopards (Panthera uncia) is the primary data source for density estimation via capture-recapture statistical methods. To identify individual snow leopards in camera trap imagery, it is necessary to match individuals from a large number of images from multiple cameras and historical catalogues, which is both time-consuming and costly. The camouflaged snow leopards also make it difficult for machine learning to classify photos, as they blend in so well with the surrounding mountain environment, rendering applicable software solutions unavailable for the species. To potentially make snow leopard individual identification available via an artificial intelligence (AI) software interface, we first trained and evaluated image classification techniques for a convolutional neural network, pose invariant embeddings (PIE) (a triplet loss network), and compared the accuracy of PIE to that of the HotSpotter algorithm (a SIFT-based algorithm).
Data were acquired from a curated library of free-ranging snow leopards taken in Afghanistan between 2012 and 2019 and from captive animals in zoos in Finland, Sweden, Germany, and the United States. We discovered several flaws in the initial PIE model, such as a small amount of background matching, that was addressed, albeit likely not fixed, using background subtraction (BGS) and left-right mirroring (LR) techniques which demonstrated reasonable accuracy (Rank 1: 74% Rank-5: 92%) comparable to the Hotspotter results (Rank 1: 74% Rank 2: 84%)The PIE BGS LR model, in conjunction with Hotspotter, yielded the following results: Rank-1: 85%, Rank-5: 95%, Rank-20: 99%. In general, our findings indicate that PIE BGS LR, in conjunction with HotSpotter, can classify snow leopards more accurately than using either algorithm alone.

URL: https://snowleopardnetwork.org/b/show.php?record=1723

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Title: Neutral and adaptive genetic variation in Indian snow leopards, Panthera uncia

Author: Golla, T. R., Tensen, L., Vipin, Kumar, K., Kumar, S., Gaur, A.

Abstract: In this study, we reveal patterns of genetic variation in snow leopards (Panthera uncia) by combining neutral (mtDNA, microsatellites) and adaptive (MHC II-DRB) genes. We collected 56 faecal samples from three locations in India. We observed moderate levels of microsatellite diversity (N = 30; A = 5.6; HO = 0.559). Nine unique MHC II-DRB sequences were identified in four snow leopard samples, of which 8 were novel. We found low levels of polymorphism in MHC class II-DRB exon, which was higher in captive (VA = 9.4%) compared to wild individuals (VA = 7.8%), likely as a result of a population bottleneck.

URL: https://snowleopardnetwork.org/b/show.php?record=1722

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Title: Effects of snow leopards (Panthera uncia) on olfactory communication of Pallas’s cats (Otocolobus manul) in the Altai Mountains, Mongolia 

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Title: Landscape resistance to gene flow in a snow leopard population from Qilianshan National Park, Gansu, China

Author: Atzeni, L., Wang, J., Riordan, P., Shi, K., Cushman, S. A.

Abstract: Context: The accurate estimation of landscape resistance to movement is important for ecological understanding and conservation applications. Rigorous estimation of resistance requires validation and optimization. One approach uses genetic data for the optimization or validation of resistance models. Objectives We used a genetic dataset of snow leopards from China to evaluate how landscape genetics resistance models varied across genetic distances and spatial scales of analysis. We evaluated whether landscape genetics models were superior to models of resistance derived from habitat suitability or isolation-by-distance.
Methods: We regressed genetically optimized, habitat-based, and isolation-by-distance hypotheses against genetic distances using mixed effect models. We explored all subset combinations of genetically optimized variables to find the most supported resistance scenario for each genetic distance.
Results: Genetically optimized models always out-performed habitat-based and isolation-by-distance hypotheses. The choice of genetic distances influenced the apparent influence of variables, their spatial scales and their functional response shapes, producing divergent resistance scenarios. Gene flow in snow leopards was largely facilitated by areas of intermediate ruggedness at intermediate elevations corresponding to small-to-large valleys within and between the mountain ranges.
Conclusions: This study highlights that landscape genetics models provide superior estimation of functional dispersal than habitat surrogates and suggests that optimization of genetic distance should be included as an optimization routine in landscape genetics, along with variables, scales, effect size and functional response shape. Furthermore, our study provides new insights on the ecological conditions that promote gene flow in snow leopards, which expands ecological knowledge, and we hope will improve conservation planning.

URL: https://snowleopardnetwork.org/b/show.php?record=1720