Abstract: It gives description complexes of mountain ecosystems fauna of Central Asia, endangered vertebrates, main threats to biodiversity and existing protected areas network. Among the rare animal species of the alpine and subalpine meadows first of all should be listed the West Tien Shan endemic, the Menzbier's marmot (Marmota menzbien); the markhor wild goat which still inhabits the Vakhsh range in Tadjikistan; the dhole (Cyon alpinus) which is practically extinct; the Tien Shan bear (Ursus arctos isabellinus), and the snow leopard (Uncia uncia); among birds, the wlute-chested dove (Columba leuconota), sandgrouse (Syrrhaptes tibetanus, snowcocks (Tetraogallus tibetanus, T.altaicus) and bearded vulture (Gypaetus barbatus).