Abstract: Snow leopards (Panthera uncia) serve as an umbrella species whose conservation benefits their high-elevation Asian habitat. Their numbers are believed to be in decline due to numerous Anthropogenic threats; however, their conservation is hindered by numerous knowledge gaps. They are the least studied genetically of all big cat species and little is known about their historic population size and range, current population trends, or connectivity across their range. Here, we use whole genome sequencing data for 41 snow leopards (37 newly sequenced) to assess population connectivity, historic population size, and current levels of genetic diversity. Among our samples, we find evidence of a primary genetic divide between the northern and southern part of the range around the Dzungarian Basin and a secondary divide south of Kyrgyzstan around the Taklamakan Desert. However, we find evidence of gene flow, suggesting that barriers between these groups are permeable. Perhaps most noteworthy, we find that snow leopards have the lowest genetic diversity of any big cat species, likely due to a persistently small population size throughout their evolutionary history. Without a large population size or ample standing genetic variation to help buffer them from any forthcoming Anthropogenic challenges, snow leopard persistence may be more tenuous than currently appreciated.

Abstract: The snow leopard population in Union Territory of Ladakh (UTL), India is at the centre of five out of eight mountain ranges within the species' habitat in the high-mountain Asia. Its strategic location is of immense conservation significance to maintain genetic connectivity and metapopulation dynamics of snow leopards (Panthera uncia). Therefore, we provide the first estimates of the snow leopard's individual-based spatial genetic characteristics from UTL. Multi-locus genotyping (n = 14 loci) of individuals (n = 19) revealed moderate genetic diversity in the population (mean number of alleles = 5.86 ± 0.55, observed heterozygosity = 0.48 ± 0.05, expected heterozygosity = 0.65 ± 0.03, allelic richness = 2.65 ± 0.15). We did not observe any evidence of population structuring (using STRUCTURE and Factorial Correspondence Analysis) or isolation by distance. However, the clustering approach based on genetic distance (Nei's standard distance and Cavalli-Sforza and Edwards distance) and subsequent discriminant analysis of principal components (DAPC) revealed three sub-clusters of related individuals within the study population without any spatial correlates. We observed 1.2% first-order relatives, suggesting sufficient dispersal and panmixia in the UTL population. We observed high fixation index (FIS = 0.26 ± 0.05; 0.17 ± 0.03 upon removing loci with null alleles) and presence of individuals from genetically divergent populations in UTL. Hence, the high positive FIS value could be attributed to both Wahlund effect and inbreeding. Prioritization and effective conservation planning of the UTL population as a source would benefit the global snow leopard population by (i) maintaining connectivity between the Himalayas and the central Asian mountain ranges, and (ii) providing refuge during future climate change-related range contraction.

Abstract: 1. Conservation policy for the high mountains of Asia increasingly recognises the need to encompass large multi-use landscapes beyond the protected area network. Due to limited long-term research in this region, our understanding of even fundamental processes, such as factors regulating large mammal populations is poor.
2. Understanding the factors that regulate animal populations, especially those generating cyclicity, is a long-standing problem in ecology. Long-term research across multiple taxa (mainly from Europe and North America) has focussed on the relative roles of food and predation in generating cyclicity in population dynamics. It remains unclear how trophic interactions that are influenced by anthropogenic stressors can affect population dynamics in human-modified landscapes.
3. We present a 10-year study to compare the effects of livestock grazing on density-dependent dynamics in two populations of bharal, Pseudois nayaur, in the Himalayas. We combine this with a mechanistic understanding of whether density dependence in these two sites acts predominantly by affecting adult survival or recruitment. We compared and quantified density dependence in the bharal population by fitting Bayesian Gompertz state-space models.
4. We found evidence for negative density dependence which indicates possible cyclic dynamics in the bharal population of the site (Tabo) with low livestock density. The population dynamics of this site were driven by recruited offspring—with a 2-year density-dependent lag effect—rather than adult survival. In the site with high livestock density (Kibber), this density dependence was not detected. We postulate the potential role of excessive grazing by livestock in affecting offspring recruitment, thereby affecting the bharal population in Kibber.
5. Synthesis and applications: Our results suggest that conservation action to facilitate wild herbivore population recovery, such as the development of protected areas and village reserves, needs to account for density-dependent regulation. Sites with trophy hunting require continuous monitoring to understand the effects of density dependence so that appropriate hunting quotas can be formulated.

Abstract: Large mammalian carnivores have undergone catastrophic declines during the Anthropocene across the world. Despite their pivotal roles as apex predators in food webs and ecosystem dynamics, few detailed di- etary datasets of large carnivores exist, prohibiting deep understanding of their coexistence and persistence in human-dominated landscapes. Here, we present fine-scaled, quantitative trophic interactions among sym- patric carnivores from three assemblages in the Mountains of Southwest China, a global biodiversity hotspot harboring the world’s richest large-carnivore diversity, derived from DNA metabarcoding of 1,097 fecal sam- ples. These assemblages comprise a large-carnivore guild ranging from zero to five species along with two mesocarnivore species. We constructed predator-prey food webs for each assemblage and identified 95 vertebrate prey taxa and 260 feeding interactions in sum. Each carnivore species consumed 6–39 prey taxa, and dietary diversity decreased with increased carnivore body mass across guilds. Dietary partitioning was more evident between large-carnivore and mesocarnivore guilds, yet different large carnivores showed divergent proportional utilization of different-sized prey correlating with their own body masses. Large car- nivores particularly selected livestock in Tibetan-dominated regions, where the indigenous people show high tolerance toward wild predators. Our results suggest that dietary niche partitioning and livestock subsidies facilitate large-carnivore sympatry and persistence and have key implications for sustainable conservation promoting human-carnivore coexistence.

Abstract: Mammalian communities inhabiting temperate grasslands are of conservation concern globally, especially in Central Asia, where livestock numbers have dramatically increased in recent decades, leading to overgrazing and land-use change. Yet, how this pervasive presence of livestock herds affects the community of wild mammals remains largely unstudied. We used systematic camera trapping at 216 sites across remote, mountainous areas of the Mongolian Altai Mountains to assess the spatial and temporal patterns of occurrence and the interspecific relationships within a mammalian community that includes different categories of livestock. By adopting a recently proposed multispecies occupancy model that incorporates interspecific correlation in occupancy, we found several statistically strong correlations in occupancy among species pairs, with the majority involving livestock. The sign of such associations was markedly species-dependent, with larger wild species of conservation concern, namely, snow leopard and Siberian ibex, avoiding livestock presence. As predicted, we found evidence of a positive correlation in occupancy between predators and their respective main prey. Contrary to our expectations, a number of intraguild species pairs also showed positive co-occurrence, with no evidence of spatiotemporal niche partitioning. Overall, our study suggests that livestock encroaching into protected areas influences the whole local community of wild mammals. Though pastoralism has coexisted with wildlife for millennia in central Asian grasslands, our findings suggest that policies and practices to decrease the pressure of livestock husbandry on wildlife are needed, with special attention on large species, such as the snow leopard and its wild prey, which seem to be particularly sensitive to this pervasive livestock presence.