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Rode, J., Pelletier, A., Fumey, J., Rode, S., Cabanat, A. L., Ouvrard, A., Chaix, B., White, B., Harnden, M., Xuan, N. T., Vereshagin, A., Casane, D. (2020). Diachronic monitoring of snow leopards at Sarychat-Ertash State Reserve (Kyrgyzstan) through scat genotyping: a pilot study. bioRxiv, , 1–21.
Abstract: Snow leopards (Panthera uncia) are a keystone species of Central Asia’s high mountain ecosystem. The species is listed as vulnerable and is elusive, preventing accurate population assessments that could inform conservation actions. Non-invasive genetic monitoring conducted by citizen scientists offers avenues to provide key data on this species that would otherwise be inaccessible. From 2011 to 2015, OSI-Panthera citizen science expeditions tracked signs of presence of snow leopards along transects in the main valleys and crests of the Sarychat-Ertash State Reserve (Kyrgyzstan). Scat samples were genotyped at seven autosomal microsatellite loci and at a X/Y locus for sex identification, which allowed estimating a minimum of 11 individuals present in the reserve from 2011 to 2015. The genetic recapture of 7 of these individuals enabled diachronic monitoring, providing indications of individuals’ movements throughout the reserve. We found putative family relationships between several individuals. Our results demonstrate the potential of this citizen science program to get a precise description of a snow leopard population through time.
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Korablev, M. P., Poyarkov, A. D., Karnaukhov, A. S., Zvychaynaya, E. Y., Kuksin, A. N., Malykh, S. V., Istomov, S. V., Spitsyn, S. V., Aleksandrov, D. Y., Hernandez-Blanco, J. A., Munkhtsog, B., Munkhtogtokh, O., Putintsev, N. I., Vereshchagin, A. S., Becmurody, A., Afzunov, S., Rozhnov, V. V. (2021). Large-scale and fine-grain population structure and genetic diversity of snow leopards (Panthera uncia Schreber, 1776) from the northern and western parts of the range with an emphasis on the Russian population. Conservation Genetics, .
Abstract: The snow leopard (Panthera uncia Schreber, 1776) population in Russia and Mongolia is situated at the northern edge of the range, where instability of ecological conditions and of prey availability may serve as prerequisites for demographic instability and, consequently, for reducing the genetic diversity. Moreover, this northern area of the species distribution is connected with the western and central parts by only a few small fragments of potential habitats in the Tian-Shan spurs in China and Kazakhstan. Given this structure of the range, the restriction of gene flow between the northern and other regions of snow leopard distribution can be expected. Under these conditions, data on population genetics would be extremely important for assessment of genetic diversity, population structure and gene flow both at regional and large-scale level. To investigate large-scale and fine-grain population structure and levels of genetic diversity we analyzed 108 snow leopards identified from noninvasively collected scat samples from Russia and Mongolia (the northern part of the range) as well as from Kyrgyzstan and Tajikistan (the western part of the range) using panel of eight polymorphic microsatellites. We found low to moderate levels of genetic diversity in the studied populations. Among local habitats, the highest heterozygosity and allelic richness were recorded in Kyrgyzstan (He = 0.66 ± 0.03, Ho = 0.70 ± 0.04, Ar = 3.17) whereas the lowest diversity was found in a periphery subpopulation in Buryatia Republic of Russia (He = 0.41 ± 0.12, Ho = 0.29 ± 0.05, Ar = 2.33). In general, snow leopards from the western range exhibit greater genetic diversity (He = 0.68 ± 0.04, Ho = 0.66 ± 0.03, Ar = 4.95) compared to those from the northern range (He = 0.60 ± 0.06, Ho = 0.49 ± 0.02, Ar = 4.45). In addition, we have identified signs of fragmentation in the northern habitat, which have led to significant genetic divergence between subpopulations in Russia. Multiple analyses of genetic structure support considerable genetic differentiation between the northern and western range parts, which may testify to subspecies subdivision of snow leopards from these regions. The observed patterns of genetic structure are evidence for delineation of several management units within the studied populations, requiring individual approaches for conservation initiatives, particularly related to translocation events. The causes for the revealed patterns of genetic structure and levels of genetic diversity are discussed.
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Vereschagin N.K., S. T. B. (1976). Rare mammals in the USSR: protection challenges.
Abstract: A group of rare and endangered species was segregated within the game and non-game mammals of the USSR. Some species in the group were formerly referred to game species. But due to over-hunting and the absence of measures aimed at their reproduction the population dropped sharply. Mammal fauna of the USSR includes more than 80 species that require special protection. The Red list of IUCN includes, among the others, white bear, Transcaucasian sub-species of brown bear, Amur and Turan tigers, snow leopard, Caucasian and Amur leopards, caracal, cheetah, Tien-Shan and Ussuri sub-species of dhole, Atlantic walrus, island seal, kulan, Bukhara red deer, New Land reindeer, goitered gazelle, Menzbier's marmot.
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Pavlinov I.Ya. (1998). Taxonomy of mammals in the USSR: additions.
Abstract: A full hierarchic system of mammal fauna in the USSR and CIS countries, list of synonyms, comments on taxonomy, and information about geographical distribution are given. Genus Uncia Gray, 1854 includes one species U. uncia (Schreber, 1776) distributed in highlands (up to 5,000 m) of Central Asia (Tibet, Pamir, Tien-Shan, Altai). Synonyms: irbis.
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Pavlinov I.Ya. (1995). Mammals of Eurasia. II. Non-Rodentia: Taxonomic and geographic reference book.
Abstract: This reference book provides a detailed epi-species classification of terrain mammal orders other than rodents. Identification keys for taxons, information about geographical distribution, synonyms, and comments on taxonomy are given. Genus Uncia Gray, 1854 includes one species Uncia uncia (Schreber, 1776), distributed in highlands of Central Asia (Tibet, Pamir, Tien-Shan, Altai). Synonyms: irbis Ehrenberg, 1830; uncioides Horsfield, 1855; schneideri Zukovsky, 1950.
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Jackson, R., & Roe, J. (2002). Preliminary Observations On Non-Invasive Techniques for Identifying Individual Snow Leopards and Monitoring Populations.. Islt: Islt.
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Bagchi, S., Mishra, C., & Bhatnagar, Y. (2004). Conflicts between traditional pastoralism and conservation of Himalayan ibex (Capra sibirica) in the Trans-Himalayan mountains. Animal Conservation, 7, 121–128.
Abstract: There is recent evidence to suggest that domestic livestock deplete the density and diversity of wild herbivores in the cold deserts of the Trans-Himalaya by imposing resource limitations. To ascertain the degree and nature of threats faced by Himalayan ibex (Capra sibirica) from seven livestock species, we studied their resource use patterns over space, habitat and food dimensions in the pastures of Pin Valley National Park in the Spiti region of the Indian Himalaya. Species diet profiles were obtained by direct observations. We assessed the similarity in habitat use and diets of ibex and livestock using Non-Metric Multidimensional Scaling. We estimated the influence of the spatial distribution of livestock on habitat and diet choice of ibex by examining their co-occurrence patterns in cells overlaid on the pastures. The observed co-occurrence of ibex and livestock in cells was compared with null-models generated through Monte Carlo simulations. The results suggest that goats and sheep impose resource limitations on ibex and exclude them from certain pastures. In the remaining suitable habitat, ibex share forage with horses. Ibex remained relatively unaffected by other livestock such as yaks, donkeys and cattle. However, most livestock removed large amounts of forage from the pastures (nearly 250 kg of dry matter/day by certain species), thereby reducing forage availability for ibex. Pertinent conservation issues are discussed in the light of multiple-use of parks and current socio-economic transitions in the region, which call for integrating social and ecological feedback into management planning.
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Rodgers, T. W., Janecka, J. E. (2013). Applications and techniques for non-invasive faecal genetics research in felid conservation.
Abstract: Non-invasive genetic techniques utilising DNA extracted from faeces hold great promise for felid conservation research. These methods can be used to establish species
distributions, model habitat requirements, analyse diet, estimate abundance and population density, and form the basis for population, landscape and conservation genetic analyses. Due to the elusive nature of most felid species, non-invasive genetic methods have the potential to provide
valuable data that cannot be obtained with traditional observational or capture techniques. Thus, these methods are particularly valuable for research and conservation of endangered
felid species. Here, we review recent studies that use non-invasive faecal genetic techniques to survey or study wild felids; provide an overview of field, laboratory and analysis techniques; and offer suggestions on how future non-invasive genetic studies can be expanded or improved to more effectively support conservation.
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Lama, R. P., Ghale, T. R., Suwal, M. K., Ranabhat, R., Regmi, G. R. (2018). First photographic evidence of Snow Leopard Panthera uncia (Mammalia: Carnivora: Felidae) outside current protected areas network in Nepal Himalaya. Journal of Threatened Taxa, , 12086–12090.
Abstract: The Snow Leopard Panthera uncia is a rare top predator of high-altitude ecosystems and insufficiently surveyed outside of protected areas in Nepal. We conducted a rapid camera-trapping survey to assess the presence of Snow Leopard in the Limi valley of Humla District. Three individuals were recorded in two camera locations offering the first photographic evidence of this elusive cat outside the protected area network of Nepal. In addition to Snow Leopard, the Blue Sheep Pseudois nayaur, Beech Marten Martes foina, Pika Ochotona spp. and different species of birds were also detected by camera-traps. More extensive surveys and monitoring are needed for reliably estimating the population size of Snow Leopard in the area. The most urgent needs are community-based conservation activities aimed at mitigating immediate threats of poaching, retaliatory killing, and rapid prey depletion to ensure the survival of this top predator in the Himalaya.
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Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. (2014). Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples. Conservation Genetic Resource, 6(2), 369:373.
Abstract: Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
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