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Author |
Johansson, O., Ullman, K., Lkhagvajav, P., Wiseman, M.,
Malmsten, J., Leijon, M. |
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Title |
Detection and Genetic Characterization of Viruses Present in
Free-Ranging Snow Leopards Using Next-Generation Sequencing |
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Journal Article |
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2020 |
Publication |
Frontiers in Veterinary Science |
Abbreviated Journal |
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7 |
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645 |
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1-9 |
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snow leopard, free-ranging, virome, Mongolia, rectal swabs, next-generating sequencing, Panthera unica |
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Abstract |
Snow leopards inhabit the cold, arid environments of the high
mountains of South and Central Asia. These living conditions likely
affect the abundance and composition of microbes with the capacity to
infect these animals. It is important to investigate the microbes that
snow leopards are exposed to detect infectious disease threats and
define a baseline for future changes that may impact the health of this
endangered felid. In this work, next-generation sequencing is used to
investigate the fecal (and in a few cases serum) virome of seven snow
leopards from the Tost Mountains of Mongolia. The viral species to which
the greatest number of sequences reads showed high similarity was
rotavirus. Excluding one animal with overall very few sequence reads,
four of six animals (67%) displayed evidence of rotavirus infection. A
serum sample of a male and a rectal swab of a female snow leopard
produced sequence reads identical or closely similar to felid
herpesvirus 1, providing the first evidence that this virus infects snow
leopards. In addition, the rectal swab from the same female also
displayed sequence reads most similar to feline papillomavirus 2, which
is the first evidence for this virus infecting snow leopards. The rectal
swabs from all animals also showed evidence for the presence of small
circular DNA viruses, predominantly Circular Rep-Encoding
Single-Stranded (CRESS) DNA viruses and in one case feline anellovirus.
Several of the viruses implicated in the present study could affect the
health of snow leopards. In animals which are under environmental
stress, for example, young dispersing individuals and lactating females,
health issues may be exacerbated by latent virus infections. |
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1612 |
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Khanal, G., Mishra, C., Suryawanshi, K. R. |
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Title |
Relative influence of wild prey and livestock abundance on
carnivore-caused livestock predation |
Type |
Journal Article |
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Year |
2020 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
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1-11 |
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conservation conflict, human carnivore conflict, large mammalian carnivore, livestock depredation, Nepal, Shey Phoksundo National Park, snow leopard |
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Abstract |
Conservation conflict over livestock depredation is one of the
key drivers of large mammalian carnivore declines worldwide. Mitigating
this conflict requires strategies informed by reliable knowledge of
factors influencing livestock depredation. Wild prey and livestock
abundance are critical factors influencing the extent of livestock
depredation. We compared whether the extent of livestock predation by
snow leopards Panthera uncia differed in relation to densities of wild
prey, livestock, and snow leopards at two sites in Shey Phoksundo
National Park, Nepal. We used camera trap-based spatially explicit
capture–recapture models to estimate snow leopard density;
double-observer surveys to estimate the density of their main prey
species, the blue sheep Pseudois nayaur; and interview-based household
surveys to estimate livestock population and number of livestock killed
by snow leopards. The proportion of livestock lost per household was
seven times higher in Upper Dolpa, the site which had higher snow
leopard density (2.51 snow leopards per 100 km2) and higher livestock
density (17.21 livestock per km2) compared to Lower Dolpa (1.21 snow
leopards per 100 km2; 4.5 livestock per km2). The wild prey density was
similar across the two sites (1.81 and 1.57 animals per km2 in Upper and
Lower Dolpa, respectively). Our results suggest that livestock
depredation level may largely be determined by the abundances of the
snow leopards and livestock and predation levels on livestock can vary
even at similar levels of wild prey density. In large parts of the snow
leopard range, livestock production is indispensable to local
livelihoods and livestock population is expected to increase to meet the
demand of cashmere. Hence, we recommend that any efforts to increase
livestock populations or conservation initiatives aimed at recovering or
increasing snow leopard population be accompanied by better herding
practices (e.g., predator-proof corrals) to protect livestock from snow
leopard. |
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1611 |
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Khanyari, M., Zhumabai uulu, K., Luecke, S., Mishra, C.,
Suryawanshi, K. |
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Understanding population baselines: status of mountain ungulate
populations in the Central Tien Shan Mountains, Kyrgyzstan |
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Journal Article |
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2020 |
Publication |
Mammalia |
Abbreviated Journal |
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1-8 |
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conservation; human-use landscapes; hunting concession; mountain ungulates; population baselines; protected areas. |
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We assessed the density of argali (Ovis ammon) and ibex
(Capra sibirica) in Sarychat-Ertash Nature Reserve and its neighbouring
Koiluu valley. Sarychat is a protected area, while Koiluu is a human-use
landscape which is a partly licenced hunting concession for mountain
ungulates and has several livestock herders and their permanent
residential structures. Population monitoring of mountain ungulates can
help in setting measurable conservation targets such as appropriate
trophy hunting quotas and to assess habitat suitability for predators
like snow leopards (Panthera uncia). We employed the double-observer
method to survey 573 km2 of mountain ungulate habitat inside Sarychat
and 407 km2 inside Koiluu. The estimated densities of ibex and argali in
Sarychat were 2.26 (95% CI 1.47–3.52) individuals km-2 and 1.54 (95% CI
1.01–2.20) individuals km-2, respectively. Total ungulate density in
Sarychat was 3.80 (95% CI 2.47–5.72) individuals km-2. We did not record
argali in Koiluu, whereas the density of ibex was 0.75 (95% CI
0.50–1.27) individuals km-2. While strictly protected areas can achieve
high densities of mountain ungulates, multi-use areas can harbour
meaningful
though suppressed populations. Conservation of mountain ungulates and
their predators can be enhanced by maintaining Sarychat-like “pristine”
areas interspersed within a matrix of multi-use areas like Koiluu. |
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1610 |
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Maheshwari, A., Sathyakumar, S. |
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Title |
Patterns of Livestock Depredation and Large Carnivore
Conservation Implications in the Indian Trans-Himalaya |
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Journal Article |
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Year |
2020 |
Publication |
Journal of Arid Environments |
Abbreviated Journal |
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1-5 |
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Large carnivores Livestock depredation Participatory approach Snow leopard Kargil Himalaya |
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Livestock is one of the major sources of livelihood for the
agro-pastoral communities in central and south Asia. Livestock
depredation by large carnivores is a wide-ranging issue that leads to
economic losses and a deviance from co-existence. We investigated the
grass root factors causing livestock depredation in Kargil, Ladakh and
tested the findings of diet analysis in validating reported livestock
depredation. Globally vulnerable snow leopard (Panthera uncia) and more
common wolf (Canis lupus) were the two main wild predators. A total of
1113 heads of livestock were reportedly killed by wolf (43.6%) followed
by unknown predators (31.4%) and snow leopard (21.5%) in the study site
from 2009 to 2012, which comes to 2.8% annual livestock losses. Scat
analysis also revealed a significant amount of livestock in the diet of
snow leopard (47%) and wolf (51%). Poor livestock husbandry practices
and traditional livestock corrals were found to be the major drivers
contributing in the livestock depredation. Based on the research
findings, we worked with the local communities to sensitize them about
wildlife conservation and extended limited support for predator proof
livestock corrals at a small scale. Eventually it helped in reducing
conflict level and conserving the globally threatened carnivores. We
conclude that a participatory approach has been successful to generate
an example in reducing large carnivore-human conflict in the west
Himalaya. |
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1609 |
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Murali,R., Ikhagvajav, P., Amankul, V., Jumabay, K., Sharma,
K., Bhatnagar, Y. V., Suryawanshi, K., Mishra, C. |
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Ecosystem service dependence in livestock and crop-based |
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Journal Article |
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2020 |
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Journal of Arid Environments |
Abbreviated Journal |
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180 |
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1-10 |
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Provisioning services Arid ecosystems Local communities Land-use |
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Globally, in semi-arid and arid landscapes, there is an
ongoing transition from livestock-production systems to crop-production
systems, and in many parts of Asia's arid mountains, mining for minerals
is also increasing. These changes are accompanied by a change in the
generation and quality of ecosystem services (ES), which can impact
human well-being. In this study, to better understand the impacts of
such transitions, we quantified ES in two crop-based and three
livestock-based production systems in the arid and semi-arid landscapes
of the High Himalaya and Central Asia, specifically in the Indian
Himalaya, Kyrgyz Tien Shan, and Mongolian Altai. Our results showed 1)
high economic dependence (3.6–38 times the respective annual household
income) of local farmers on provisioning ES, with the economic value of
ES being greater in livestock-production systems (7.4–38 times the
annual household income) compared to crop-production systems (3.6–3.7
times the annual household income); 2) ES input into cashmere
production, the main commodity from the livestock-production systems,
was 13–18 times greater than the price of cashmere received by the
farmer; and 3) in the livestock production systems affected by mining,
impacts on ES and quality of life were reported to be negative by
majority of the respondents. We conclude that livestock-based systems
may be relatively more vulnerable to degrading impacts of mining and
other ongoing developments due to their dependence on larger ES resource
catchments that tend to have weaker land tenure and are prone to
fragmentation. In contrast to the general assumption of low value of ES
in arid and semi-arid landscapes due to relatively low primary
productivity, our study underscores the remarkably high importance of ES
in supporting local livelihoods. |
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1603 |
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Rode, J., Pelletier, A., Fumey, J., Rode, S., Cabanat, A. L., Ouvrard, A., Chaix, B., White, B., Harnden, M., Xuan, N. T., Vereshagin, A., Casane, D. |
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Diachronic monitoring of snow leopards at Sarychat-Ertash State Reserve (Kyrgyzstan) through scat genotyping: a pilot study |
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Journal Article |
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2020 |
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bioRxiv |
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1-21 |
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snow leopard, noninvasive genotyping, population dynamics, microsatellite, relatedness, diachronic monitoring, citizen science, Central Asia |
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Snow leopards (Panthera uncia) are a keystone species of Central Asia’s high mountain ecosystem. The species is listed as vulnerable and is elusive, preventing accurate population assessments that could inform conservation actions. Non-invasive genetic monitoring conducted by citizen scientists offers avenues to provide key data on this species that would otherwise be inaccessible. From 2011 to 2015, OSI-Panthera citizen science expeditions tracked signs of presence of snow leopards along transects in the main valleys and crests of the Sarychat-Ertash State Reserve (Kyrgyzstan). Scat samples were genotyped at seven autosomal microsatellite loci and at a X/Y locus for sex identification, which allowed estimating a minimum of 11 individuals present in the reserve from 2011 to 2015. The genetic recapture of 7 of these individuals enabled diachronic monitoring, providing indications of individuals’ movements throughout the reserve. We found putative family relationships between several individuals. Our results demonstrate the potential of this citizen science program to get a precise description of a snow leopard population through time. |
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1602 |
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Farrington, J., Tsering, D. |
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Title |
Snow leopard distribution in the Chang Tang region of Tibet, China |
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Journal Article |
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2020 |
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Global Ecology and Conservation |
Abbreviated Journal |
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23 |
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In 2006 and 2007, the authors conducted human-wildlife conflict surveys in the Tibet Autonomous Region’s (TAR) Shainza, Nyima, and Tsonyi Counties, located in the TAR’s remote Chang Tang region. At this time, prior knowledge of the snow leopard in this vast 700,000 km2 region was limited to just eight firsthand snow leopard sign and conflict location records and 15 secondhand records. These surveys revealed a previously undocumented and growing problem of human-snow leopard conflict. The 2007 survey also yielded 39 new snow leopard conflict incident locations and 24 new snow leopard sign locations. Next, snow leopard telephone interviews and mapping exercises were conducted with Tibet Forestry Bureau staff that yielded an additional 63 and 144 new snow leopard conflict and sighting location records, respectively. These 270 new snow leopard location records, together with 39 records collected by other observers from 1988 to 2009, were compiled into a snow leopard distribution map for the Chang Tang. This effort greatly expanded knowledge of the snow leopard’s distribution in this region which remains one of the least understood of the snow leopard’s key range areas. New knowledge gained on snow leopard distribution in the Chang Tang through this exercise will help identify human-snow leopard conflict hot spots and inform design of human-snow leopard conflict mitigation and conservation strategies for northwest Tibet. Nevertheless, extensive additional field verification work will be required to definitively delineate snow leopard distribution in the Chang Tang. Importantly, since 2006, a number of major transportation infrastructure projects have made the Chang Tang more accessible, including paving of highways, new railroads, and new airports. This has led to a greatly increased number of tourists visiting western Tibet, particularly Mt. Kailash and Lake Manasarovar. At the same time, large areas of the Chang Tang have been fenced for livestock pastures as part of government initiatives to allocate pasturelands to individual families. All three of these developments have a large potential to cause disturbance to snow leopards and their prey species, including by hindering their movements and degrading their habitat. Therefore, future conservation measures in the Chang Tang will need to insure that development activities and the growing number of visitors to the Chang Tang do not adversely affect the distribution of snow leopards and their prey species or directly degrade their habitat. |
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SLN @ rakhee @ |
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1601 |
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Johansson, O., Samelius, G., Wikberg, E, Chapron, G., Mishra, C., Low, M |
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Identification errors in camera- trap studies result in systematic population overestimation |
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2020 |
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Scientific Reports |
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10 |
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6393 |
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1-10 |
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Reliable assessments of animal abundance are key for successful conservation of endangered species. For elusive animals with individually-unique markings, camera-trap surveys are a benchmark standard for estimating local and global population abundance. Central to the reliability of resulting abundance estimates is the assumption that individuals are accurately identified from photographic captures. To quantify the risk of individual misidentification and its impact on population abundance estimates we performed an experiment under controlled conditions in which 16 captive snow leopards (Panthera uncia) were camera-trapped on 40 occasions and eight observers independently identified individuals and recaptures. Observers misclassified 12.5% of all capture occasions, resulting in systematically inflated population abundance estimates on average by one third (mean ± SD = 35 ± 21%). Our results show that identifying individually-unique individuals from camera-trap photos may not be as reliable as previously believed, implying that elusive and endangered species could be less abundant than current estimates indicate. |
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1496 |
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Poyarkov, A. D., Munkhtsog, B., Korablev, M. P., Kuksin, A. N., Alexandrov, D. Y., Chistopolova, M. D.,Hernandez-Blanco, J. A., Munkhtogtokh, O., Karnaukhov, A. S., Lkhamsuren, N., Bayaraa, M., Jackson, R. M., Maheshwari, A., Rozhnov, V. V. |
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Assurance of the existence of a trans-boundary population of the snow leopard (Panthera uncia) at Tsagaanshuvuut – Tsagan- Shibetu SPA at the Mongolia-Russia border |
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Journal Article |
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2020 |
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Integrative Zoology |
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15 |
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224-231 |
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FST, home range, Panthera uncia, snow leopard, trans-boundary population |
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The existence of a trans-boundary population of the snow leopard (Panthera uncia) that inhabits the massifs of Tsagaanshuvuut (Mongolia) – Tsagan-Shibetu (Russia) was determined through non-invasive genetic analysis of scat samples and by studying the structure of territory use by a collared female individual. The genetic analysis included species identification of samples through sequencing of a fragment of the cytochrome b gene and individual identification using a panel of 8 microsatellites. The home range of a female snow leopard marked with a satellite Global Positioning System (GPS) collar was represented by the minimum convex polygon method (MCP) 100, the MCP 95 method and the fixed kernel 95 method. The results revealed insignificant genetic differentiation between snow leopards that inhabit both massifs (minimal fixation index [FST]), and the data testify to the unity of the cross-border group. Moreover, 5 common individuals were identified from Mongolian and Russian territories. This finding clearly shows that their home range includes territories of both countries. In addition, regular movement of a collared snow leopard in Mongolia and Russia confirmed the existence of a cross-border snow leopard group. These data support that trans-boundary conservation is important for snow leopards in both countries. We conclude that it is crucial for Russia to study the northern range of snow leopards in Asia. |
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1493 |
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Durbach, I., Borchers, D., Sutherland, C., Sharma, K. |
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Fast, flexible alternatives to regular grid designs for spatial
capture–recapture. |
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Research Article |
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2020 |
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Methods in Ecology and Evolution |
Abbreviated Journal |
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1-13 |
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camera trap, population ecology,sampling, spatial capture-recapture, surveys |
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Spatial capture–recapture (SCR) methods use the location of
detectors (camera traps, hair snares and live-capture traps) and the
locations at which animals were detected (their spatial capture
histories) to estimate animal density. Despite the often large expense
and effort involved in placing detectors in a landscape, there has been
relatively little work on how detectors should be located. A natural
criterion is to place traps so as to maximize the precision of density
estimators, but the lack of a closed-form expression for precision has
made optimizing this criterion computationally demanding. 2. Recent
results by Efford and Boulanger (2019) show that precision can be well
approximated by a function of the expected number of detected
individuals and expected number of recapture events, both of which can
be evaluated at low computational cost. We use these results to develop
a method for obtaining survey designs that optimize this approximate
precision for SCR studies using count or binary proximity detectors, or
multi-catch traps. 3. We show how the basic design protocol can be
extended to incorporate spatially varying distributions of activity
centres and animal detectability. We illustrate our approach by
simulating from a camera trap study of snow leopards in Mongolia and
comparing estimates from our designs to those generated by regular or
optimized grid designs. Optimizing detector placement increased the
number of detected individuals and recaptures, but this did not always
lead to more precise density estimators due to less precise estimation
of the effective sampling area. In most cases, the precision of density
estimators was comparable to that obtained with grid designs, with
improvement in some scenarios where approximate CV(¬D) < 20% and density
varied spatially. 4. Designs generated using our approach are
transparent and statistically grounded. They can be produced for survey
regions of any shape, adapt to known information about animal density
and detectability, and are potentially easier and less costly to
implement. We recommend their use as good, flexible candidate designs
for SCR surveys when reasonable knowledge of model parameters exists. We
provide software for researchers to construct their own designs, in the
form of updates to design functions in the r package oSCR. |
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