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| Author | Waits, L.P.; Buckley-Beason, V.A.; Johnson, W.E.; Onorato, D.; McCarthy, T. | ||||
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A select panel of polymorphic microsatellite loci for individual identification of snow leopards (Panthera uncia) | Type | Miscellaneous | ||
| Year | 2006 | Publication | Molecular Ecology Notes | Abbreviated Journal | |
| Volume | 7 | Issue | Pages | 311-314 | |
| Keywords | identification; leopard; leopards; microsatellites,noninvasive genetic sampling,Panthera uncia,snow leopard; panthera; Panthera-uncia; panthera uncia; snow; snow-leopard; snow-leopards; snow leopard; snow leopards; uncia; endangered; carnivores; carnivore; mountain; region; central; Central Asia; asia; methods; conservation; management; Molecular; individual identification; Hair; domestic; cat; felis; captive; number; probability; using; wild | ||||
| Abstract | Snow leopards (Panthera uncia) are elusive endangered carnivores found in remote mountain regions of Central Asia. New methods for identifying and counting snow leopards are needed for conservation and management efforts. To develop molecular genetic tools for individual identification of hair and faecal samples, we screened 50 microsatellite loci developed for the domestic cat (Felis catus) in 19 captive snow leopards. Forty-eight loci were polymorphic with numbers of alleles per locus ranging from two to 11. The probability of observing matching genotypes for unrelated individuals (2.1 x10-11) and siblings (7.5x10-5) using the 10 most polymorphic loci was low, suggesting that this panel would easily discriminate among individuals in the wild. | ||||
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| Notes | Approved | no | |||
| Call Number | SLN @ rana @ 865 | Serial | 1001 | ||
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| Author | Rodgers, T. W.,Janecka, J. E. | ||||
| Title |
Applications and techniques for non-invasive faecal genetics research in felid conservation | Type | Journal Article | ||
| Year | 2013 | Publication | Abbreviated Journal | ||
| Volume | Issue | Pages | |||
| Keywords | Conservation . Elusive species . Faecal DNA . Felidae . Non-invasive genetics | ||||
| Abstract | Non-invasive genetic techniques utilising DNA extracted from faeces hold great promise for felid conservation research. These methods can be used to establish species distributions, model habitat requirements, analyse diet, estimate abundance and population density, and form the basis for population, landscape and conservation genetic analyses. Due to the elusive nature of most felid species, non-invasive genetic methods have the potential to provide valuable data that cannot be obtained with traditional observational or capture techniques. Thus, these methods are particularly valuable for research and conservation of endangered felid species. Here, we review recent studies that use non-invasive faecal genetic techniques to survey or study wild felids; provide an overview of field, laboratory and analysis techniques; and offer suggestions on how future non-invasive genetic studies can be expanded or improved to more effectively support conservation. |
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| Notes | Approved | no | |||
| Call Number | SLN @ rakhee @ | Serial | 1430 | ||
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| Author | Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. | ||||
| Title |
Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples | Type | Journal Article | ||
| Year | 2014 | Publication | Conservation Genetic Resource | Abbreviated Journal | |
| Volume | 6 | Issue | 2 | Pages | 369:373 |
| Keywords | Microsatellites,Cytochrome b, Snow Leopard, Noninvasive genetics, Individual identification | ||||
| Abstract | Molecular markers that can effectively identify noninvasively collected samples and provide genetic information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species. |
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| Notes | Approved | no | |||
| Call Number | SLN @ rakhee @ | Serial | 1428 | ||
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| Author | Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. | ||||
| Title |
Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples | Type | Journal Article | ||
| Year | 2014 | Publication | Conservation Genetic Resource | Abbreviated Journal | |
| Volume | 6 | Issue | 2 | Pages | 369:373 |
| Keywords | Microsatellites,Cytochrome b, Snow Leopard, Noninvasive genetics, Individual identification | ||||
| Abstract | Molecular markers that can effectively identify noninvasively collected samples and provide genetic information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species. endangered species |
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| Notes | Approved | no | |||
| Call Number | SLN @ rakhee @ | Serial | 1427 | ||
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| Author | Macdonald, A.A.; Johnstone, M. | ||||
| Title |
Comparative anatomy of the cardiac foramen ovale in cats (Felidae), dogs (Canidae), bears (Ursidae) and hyaenas (Hyaenidae) | Type | Journal Article | ||
| Year | 1995 | Publication | J Anat | Abbreviated Journal | |
| Volume | 186 ( Pt 2) | Issue | Pages | 235-243 | |
| Keywords | Animal; Newborn; Bears: anatomy & histology; Carnivora: anatomy & histology: embryology; Cats: anatomy & histology; Dogs: anatomy & histology; Heart Septum: anatomy & histology: embryology; Support,Non-U.S.Gov't; bear; anatomy; histology; Carnivora; embryology; Cats; cat; bears; Dog; Dogs; heart; septum; browse; non; gov't; us; government; 160 | ||||
| Abstract | The structure of the foramen ovale from 16 species representing 4 carnivore families, the Felidae, Canidae, Ursidae and Hyaenidae, was studied using the scanning electron microscope. The Felidae were represented by 9 domestic cat fetuses (Felis catus), 2 snow leopard neonates (Uncia uncia), an ocelot neonate (Leopardus pardalis), 2 lion neonates (Panthera leo), a panther neonate (Panthera pardus) and 3 tigers (Neofelis tigris), comprising 2 fetuses and a neonate. The Canidae were represented by a golden jackal neonate (Canis aureus), a newborn wolf (Canis lupus), 8 domestic dog fetuses (Canis familiaris), 3 red fox neonates (Vulpes vulpes) and a dhole neonate (Cuon alpinus). The Ursidae were represented by a brown bear neonate (Ursus arctos), a day-old grizzly bear cub (Ursus arctos horribilis), a polar bear neonate (Ursus maritimus), and 2 additional bear fetuses (species unknown). The Hyaenidae were represented by a striped hyaena neonate (Hyaena hyaena). In each species, the foramen ovale, when viewed from the terminal part of the caudal vena cava, had the appearance of a short tunnel. A thin fold of tissue, the developed remains of the embryonic septum primum, extended from the distal end of the caudal vena cava for a variable distance into the lumen of the left atrium and contributed towards the 'tunnel' appearance in all specimens. It constituted a large proportion of the tube, and its distal end was straight-edged. There was fibrous material underlying the endothelium of the flap, the apparent morphology of which suggested that it comprised cardiac muscle.(ABSTRACT TRUNCATED AT 250 WORDS) | ||||
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| ISSN | 0021-8782 | ISBN | Medium | ||
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| Notes | Document Type: eng | Approved | no | ||
| Call Number | SLN @ rana @ 269 | Serial | 632 | ||
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| Author | Brown, J.L.; Wasser, S.K.; Wildt, D.E.; Graham, L.H. | ||||
| Title |
Comparative Aspects of Steroid Hormone Metabolism and Ovarian Activity in Felids, Measured Noninvasively in Feces | Type | Journal Article | ||
| Year | 1994 | Publication | Biol Reprod | Abbreviated Journal | |
| Volume | 51 | Issue | 4 | Pages | 776-786 |
| Keywords | Animal; Carbon; Radioisotopes; Carnivora; Cats; Chromatography; High; Pressure; Liquid; Comparative Study; Estradiol; metabolism; Estrone; feces; chemistry; Female; Ovary; physiology; Pregnancy; Progesterone; Pseudopregnancy; Support; Non-U.S.Gov't; browse; non; government; gov't; us; 170 | ||||
| Abstract | Noninvasive fecal assays were used to study steroid metabolism and ovarian activity in several felid species. Using the domestic cat (Felis catus) as model, the excretory products of injected [14C]estradiol (E2) and [14C]progesterone (P4) were determined. Within 2 days, 97.0 +/- 0.6% and 96.7 +/- 0.5% of recovered E2 and P4 radioactivity, respectively, was found in feces. E2 was excreted as unconjugated estradiol and estrone (40%) and as a non-enzyme- hydrolyzable conjugate (60%). P4 was excreted primarily as non-enzyme- hydrolyzable, conjugated metabolites (78%) and as unconjugated pregnenolone epimers. A simple method for extracting fecal steroid metabolites optimized extraction efficiencies of the E2 and P4 excretion products (90.1 +/- 0.8% and 87.2 +/- 1.4%, respectively). Analysis of HPLC fractions of extracted fecal samples from the radiolabel-injected domestic cats revealed that E2 immunoreactivity coincided primarily with the unconjugated metabolized [14C]E2 peak, whereas progestogen immunoreactivity coincided with a single conjugated epimer and multiple unconjugated pregnenolone epimers. After HPLC separation, similar immunoreactive E2 and P4 metabolite profiles were observed in the leopard cat (F. bengalensis), cheetah (Acinonyx jubatus), clouded leopard (Neofelis nebulosa), and snow leopard (Panthera uncia). Longitudinal analyses demonstrated that changes in fecal E2 and P4 metabolite concentrations reflected natural or artificially induced ovarian activity. For example, severalfold increases in E2 excretion were associated with overt estrus or exogenous gonadotropin treatment, and elevated fecal P4 metabolite concentrations occurred during pregnant and nonpregnant (pseudopregnant) luteal phases. Although overall concentrations were similar, the duration of elevated fecal P4 metabolites during pseudopregnancy was approximately half that observed during pregnancy. In summary, steroid metabolism mechanisms appear to be conserved among these physically diverse, taxonomically related species. Results indicate that this hormone-monitoring approach will be extremely useful for elucidating the hormonal regulatory mechanism associated with the reproductive cycle, pregnancy, and parturition of intractable and endangered felid species. | ||||
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| ISSN | 0006-3363 | ISBN | Medium | ||
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| Notes | Document Type: eng | Approved | no | ||
| Call Number | SLN @ rana @ 251 | Serial | 198 | ||
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| Author | Bagchi, S.; Mishra, C.; Bhatnagar, Y. | ||||
| Title |
Conflicts between traditional pastoralism and conservation of Himalayan ibex (Capra sibirica) in the Trans-Himalayan mountains | Type | Journal Article | ||
| Year | 2004 | Publication | Animal Conservation | Abbreviated Journal | |
| Volume | 7 | Issue | Pages | 121-128 | |
| Keywords | conflicts; traditional pastoralism; himalayan ibex; ibex; capra sibirica; trans-himalayan mountains; pin valley national park; spiti region; non-metric multidimensional scaling; snow leopard; wolf; wild dog; Lynx; wild ass; Tibetan argali; Tibetan antelope; Tibetan gazelle; urial; bharal; Pin River; pin valley; Parahio; goat; sheep; Cattle; horses; yaks; donkeys; diet; free-ranging horses; herded horses; grazing; 5290 | ||||
| Abstract | There is recent evidence to suggest that domestic livestock deplete the density and diversity of wild herbivores in the cold deserts of the Trans-Himalaya by imposing resource limitations. To ascertain the degree and nature of threats faced by Himalayan ibex (Capra sibirica) from seven livestock species, we studied their resource use patterns over space, habitat and food dimensions in the pastures of Pin Valley National Park in the Spiti region of the Indian Himalaya. Species diet profiles were obtained by direct observations. We assessed the similarity in habitat use and diets of ibex and livestock using Non-Metric Multidimensional Scaling. We estimated the influence of the spatial distribution of livestock on habitat and diet choice of ibex by examining their co-occurrence patterns in cells overlaid on the pastures. The observed co-occurrence of ibex and livestock in cells was compared with null-models generated through Monte Carlo simulations. The results suggest that goats and sheep impose resource limitations on ibex and exclude them from certain pastures. In the remaining suitable habitat, ibex share forage with horses. Ibex remained relatively unaffected by other livestock such as yaks, donkeys and cattle. However, most livestock removed large amounts of forage from the pastures (nearly 250 kg of dry matter/day by certain species), thereby reducing forage availability for ibex. Pertinent conservation issues are discussed in the light of multiple-use of parks and current socio-economic transitions in the region, which call for integrating social and ecological feedback into management planning. | ||||
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| Notes | Document Type: English | Approved | no | ||
| Call Number | SLN @ rana @ 514 | Serial | 106 | ||
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| Author | Rode, J., Pelletier, A., Fumey, J., Rode, S., Cabanat, A. L., Ouvrard, A., Chaix, B., White, B., Harnden, M., Xuan, N. T., Vereshagin, A., Casane, D. | ||||
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Diachronic monitoring of snow leopards at Sarychat-Ertash State Reserve (Kyrgyzstan) through scat genotyping: a pilot study | Type | Journal Article | ||
| Year | 2020 | Publication | bioRxiv | Abbreviated Journal | |
| Volume | Issue | Pages | 1-21 | ||
| Keywords | snow leopard, noninvasive genotyping, population dynamics, microsatellite, relatedness, diachronic monitoring, citizen science, Central Asia | ||||
| Abstract | Snow leopards (Panthera uncia) are a keystone species of Central Asia’s high mountain ecosystem. The species is listed as vulnerable and is elusive, preventing accurate population assessments that could inform conservation actions. Non-invasive genetic monitoring conducted by citizen scientists offers avenues to provide key data on this species that would otherwise be inaccessible. From 2011 to 2015, OSI-Panthera citizen science expeditions tracked signs of presence of snow leopards along transects in the main valleys and crests of the Sarychat-Ertash State Reserve (Kyrgyzstan). Scat samples were genotyped at seven autosomal microsatellite loci and at a X/Y locus for sex identification, which allowed estimating a minimum of 11 individuals present in the reserve from 2011 to 2015. The genetic recapture of 7 of these individuals enabled diachronic monitoring, providing indications of individuals’ movements throughout the reserve. We found putative family relationships between several individuals. Our results demonstrate the potential of this citizen science program to get a precise description of a snow leopard population through time. | ||||
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| Call Number | Serial | 1602 | |||
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| Author | Chetri, M, Odden, M., Sharma, K., Flagstad, O., Wegge, P | ||||
| Title |
Estimating snow leopard density using fecal DNA in a large landscape in north-central Nepal | Type | Journal Article | ||
| Year | 2019 | Publication | Global Ecology and Conservation | Abbreviated Journal | |
| Volume | Issue | 17 | Pages | 1-8 | |
| Keywords | Panthera uncia, Density, Annapurna-Manaslu landscape, Noninvasive, Spatial scale | ||||
| Abstract | Although abundance estimates have a strong bearing on the conservation status of a species, less than 2% of the global snow leopard distribution range has been sampled systematically, mostly in small survey areas. In order to estimate snow leopard density across a large landscape, we collected 347 putative snow leopard scats from 246 transects (490 km) in twenty-six 5 5km sized sampling grid cells within 4393 km2 in Annapurna- Manaslu, Nepal. From 182 confirmed snow leopard scats, 81 were identified as belonging to 34 individuals; the remaining were discarded for their low (<0.625) quality index. Using maximum likelihood based spatial capture recapture analysis, we developed candidate model sets to test effects of various covariates on density and detection of scats on transects. The best models described the variation in density as a quadratic function of elevation and detection as a linear function of topography. The average density estimate of snow leopards for the area of interest within Nepal was 0.95 (SE 0.19) animals per 100 km2 (0.66e1.41 95% CL) with predicted densities varying between 0.1 and 1.9 in different parts, thus highlighting the heterogeneity in densities as a function of habitat types. Our density estimate was low compared to previous estimates from smaller study areas. Probably, estimates from some of these areas were inflated due to locally high abundances in overlap zones (hotspots) of neighboring individuals, whose territories probably range far beyond study area borders. Our results highlight the need for a large-scale approach in snow leopard monitoring, and we recommend that methodological problems related to spatial scale are taken into account in future snow leopard research. |
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| Notes | Approved | no | |||
| Call Number | SLN @ rakhee @ | Serial | 1478 | ||
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| Author | De Groot, H.; Van Swieten, P.; Aalberse, R.C. | ||||
| Title |
Evidence for a Fel d I-like molecule in the “big cats” (Felidae species) | Type | Journal Article | ||
| Year | 1990 | Publication | J Allergy Clin Immunol | Abbreviated Journal | |
| Volume | 86 | Issue | 1 | Pages | 107-116 |
| Keywords | Adolescence; Adult; Allergens; immunology; Animal; Antibodies; Monoclonal; diagnostic; use; Antibody; Specificity; Carnivora; Cats; Comparative; study; Cross; Reactions; Hair; Histamine; Release; Human; IgE; analysis; IgG; Middle; Age; Radioallergosorbent; Test; methods; Support; Non-U.S.Gov't; browse; us; government; gov't; 240 | ||||
| Abstract | In this study, we investigated the cross-reactivity pattern of IgE and IgG4 antibodies to the major feline allergen, Fel d I. We studied the IgE and IgG4 response of 11 cat-allergic patients against Fel d I-like structures in eight members of the Felidae family: ocelot, puma, serval, siberian tiger, lion, jaguar, snow leopard, and caracal. Hair from these “big cats” was collected, extracted, and used in a RAST system and histamine-release test. By means of a RAST-inhibition assay with affinity-purified Fel d I from cat dander, it was established that, in the Felidae species, a Fel d I equivalent is present that reacts with IgE and IgG4 antibodies. We found that all patients had cross-reacting IgE antibodies to seven of the Felidae tested; no IgE antibodies reactive with the caracal were found. Eight of 10 patients with IgG4 antibodies directed to cat dander also had IgG4 antibodies directed to several Felidae species, including the caracal. However, the correlation between the IgE and the IgG4 antibody specificity was low, indicating that, in the case of Fel d I IgE and IgG4, antibodies do not necessarily have the same specificity. | ||||
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| ISSN | 0091-6749 | ISBN | Medium | ||
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| Notes | Document Type: eng | Approved | no | ||
| Call Number | SLN @ rana @ 157 | Serial | 233 | ||
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