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Nawaz, M. A., Khan, B. U., Mahmood, A., Younas, M., Din, J. U, Sutherland, C. |
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An empirical demonstration of the effect of study design on density estimations |
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2021 |
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11 |
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13104 |
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1-9 |
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The simultaneous development of technology (e.g. camera traps) and statistical methods, particularly spatially capture–recapture (SCR), has improved monitoring of large mammals in recent years. SCR estimates are known to be sensitive to sampling design, yet existing recommendations about trap spacing and coverage are often not achieved, particularly for sampling wide-ranging and rare species in landscapes that allow for limited accessibility. Consequently, most camera trap studies on large wide-ranging carnivores relies on convenience or judgmental sampling, and often yields compromised results. This study attempts to highlight the importance of carefully considered sampling design for large carnivores that, because of low densities and elusive behavior, are challenging to monitor. As a motivating example, we use two years of snow leopard camera trapping data from the same areas in the high mountains of Pakistan but with vastly different camera configurations, to demonstrate that estimates of density and space use are indeed sensitive to the trapping array. A compact design, one in which cameras were placed much closer together than generally recommended and therefore have lower spatial coverage, resulted in fewer individuals observed, but more recaptures, and estimates of density and space use were inconsistent with expectations for the region. In contrast, a diffuse design, one with larger spacing and spatial coverage and more consistent with general recommendations, detected more individuals, had fewer recaptures, but generated estimates of density and space use that were in line with expectations. Researchers often opt for compact camera configurations while monitoring wide-ranging and rare species, in an attempt to maximize the encounter probabilities. We empirically demonstrate the potential for biases when sampling a small area approximately the size of a single home range—this arises from exposing fewer individuals than deemed sufficient for estimation. The smaller trapping array may also underestimate density by significantly inflating ?. On the other hand, larger trapping array with fewer detectors and poor design induces uncertainties in the estimates. We conclude that existing design recommendations have limited utility on practical grounds for devising feasible sampling designs for large ranging species, and more research on SCR designs is required that allows for integrating biological and habitat traits of large carnivores in sampling framework. We also suggest that caution should be exercised when there is a reliance on convenience sampling. |
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1642 |
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Nawaz, M. A., Khan, B. U., Mahmood, A., Younas, M., Din, J. U, Sutherland, C. |
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Title |
An empirical demonstration of the effect of study design on density estimations |
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Journal Article |
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2021 |
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11 |
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13104 |
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1-9 |
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The simultaneous development of technology (e.g. camera traps) and statistical methods, particularly spatially capture–recapture (SCR), has improved monitoring of large mammals in recent years. SCR estimates are known to be sensitive to sampling design, yet existing recommendations about trap spacing and coverage are often not achieved, particularly for sampling wide-ranging and rare species in landscapes that allow for limited accessibility. Consequently, most camera trap studies on large wide-ranging carnivores relies on convenience or judgmental sampling, and often yields compromised results. This study attempts to highlight the importance of carefully considered sampling design for large carnivores that, because of low densities and elusive behavior, are challenging to monitor. As a motivating example, we use two years of snow leopard camera trapping data from the same areas in the high mountains of Pakistan but with vastly different camera configurations, to demonstrate that estimates of density and space use are indeed sensitive to the trapping array. A compact design, one in which cameras were placed much closer together than generally recommended and therefore have lower spatial coverage, resulted in fewer individuals observed, but more recaptures, and estimates of density and space use were inconsistent with expectations for the region. In contrast, a diffuse design, one with larger spacing and spatial coverage and more consistent with general recommendations, detected more individuals, had fewer recaptures, but generated estimates of density and space use that were in line with expectations. Researchers often opt for compact camera configurations while monitoring wide-ranging and rare species, in an attempt to maximize the encounter probabilities. We empirically demonstrate the potential for biases when sampling a small area approximately the size of a single home range—this arises from exposing fewer individuals than deemed sufficient for estimation. The smaller trapping array may also underestimate density by significantly inflating |
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SLT @ jeffb @ |
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1652 |
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Atzeni, L., Cushman, S. A., Wang, J., Riordan, P., Shi, K., Bauman, D. |
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Evidence of spatial genetic structure in a snow leopard population from Gansu, China |
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2021 |
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Understanding the spatial structure of genetic diversity provides insights into a populations’ genetic status and enables assessment of its capacity to counteract the effects of genetic drift. Such knowledge is particularly scarce for the snow leopard, a conservation flagship species of Central Asia mountains. Focusing on a snow leopard population in the Qilian mountains of Gansu Province, China, we characterised the spatial genetic patterns by incorporating spatially explicit indices of diversity and multivariate analyses, based on different inertia levels of Principal Component Analysis (PCA). We compared two datasets differing in the number of loci and individuals. We found that genetic patterns were significantly spatially structured and were characterised by a broad geographical division coupled with a fine-scale cline of differentiation. Genetic admixture was detected in two adjoining core areas characterised by higher effective population size and allelic diversity, compared to peripheral localities. The power to detect significant spatial relationships depended primarily on the number of loci, and secondarily on the number of PCA axes. Spatial patterns and indices of diversity highlighted the cryptic structure of snow leopard genetic diversity, likely driven by its ability to disperse over large distances. In combination, the species’ low allelic richness and large dispersal ability result in weak genetic differentiation related to major geographical features and isolation by distance. This study illustrates how cryptic genetic patterns can be investigated and analysed at a fine spatial scale, providing insights into the spatially variable isolation effects of both geographic distance and landscape resistance. |
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SLN @ rakhee @ |
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1661 |
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Pal, R., Sutherland, C., Qureshi, Q., Sathyakumar, S. |
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Landscape connectivity and population density of snow leopards across a multi-use landscape in Western Himalaya |
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2021 |
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Animal Conservation |
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Human modification and habitat fragmentation significantly impact large carnivores requiring large, connected habitats to persist in a landscape. Understanding species responses to such change and the protection of critical areas and connectivity they provide is essential when planning effective conservation strategies. Our study examines the spatial distribution of the snow leopard (Panthera uncia) across a gradient of protection status, anthropogenic pressures and habitat types in the Gangotri landscape (~4600 km2), Western Himalaya. Using spatial capture-recapture modeling, we analyzed a 4-year camera trapping dataset (2015–2019) to assess the relationship between snow leopard movement and topography and identified the conducible areas for facilitating movement across the landscape. Snow leopard density was positively associated with elevation and slope, and was higher in protected areas (summer: 1.42 SE 0.02/100km2; winter 2.15 SE 0.03 vs. summer: 0.4 SE 0.01; winter: 0.6 SE 0.01 for unprotected areas). Precipitous terrain and several prominent mountain peaks were found to be resistant to snow leopard movement. Even with a range of human activities inside protected areas, the higher density suggests a positive impact of protection. Density-weighted connectivity showed that conducible areas are available between the Gangotri landscape and the adjacent protected areas. However, compared to protected area, these areas are relatively less used and require attention for management. We recommend regulating human activities and co-managing pastures with local communities to revive prey base outside protected areas, especially in corridors, to ensure such areas are functionally conducive. Our study provides a framework to collectively quantitate the spatial pattern of abundance, distribution and connectivity. Our approach has broad applicability for policymakers to develop strategic plans for balancing the conservation of species, and other land uses in a multi-use landscape. |
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1663 |
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Thapa, K. |
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An experience of surplus killing of livestock by a snow leopard in Nepal |
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2021 |
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CATnews |
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Winter 2021 |
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18-21 |
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Among many other threats, retaliatory killing of snow leopards Panthera uncia by people in retribution of livestock depredation is the foremost challenge for long-term survival of snow leopards. Surplus killing of up to 100 or more goats and sheep by snow leopard in a single night have been reported in snow leopard range’ countries including Nepal. Such incidences are unusual, but their impacts are substantial for subsistence agropastoral communities and snow leopard survival. Direct observation of surplus killing of livestock by a snow leopard in the corral is very rare. Here I report one incidence in a remote part of Nepal where a snow leopard killed 44 goats and was then trapped itself in a corral. This note highlights how I managed to rescue the trapped snow leopard. |
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SLN @ rakhee @ |
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1668 |
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Pandey, B. P., Thami, S., Shrestha, R., Subedi, N., Chalise, M. K., Ale, S. B. |
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Snow leopards and prey in Rolwaling Valley, Gaurishankar Conservation Area, Nepal |
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2021 |
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CATnews |
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74 |
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Windter 2021 |
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14-19 |
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The snow leopard Panthera uncia, an apex predator of the Himalayan ecosystem, often shares habitat with the wolf, Canis lupus, red fox Vulpes vulpes, and other carnivores. A biodiversity monitoring programme primarily focused on the assessment of the status of snow leopard and its prey in Rolwaling valley of Gaurishankar Conservation Area, Nepal, was carried out during June–November 2019. We deployed single camera traps in each of twelve grids sized 16 km2 each, operated 24 hours, and left alone for the whole study period. A single snow leopard was captured thrice on same camera in Rhododendron anthopogon-Hippophae thibetana scrubland, near Tsho Rolpa glacial lake (4,536 m). Alongwith snow leopard, wolves were also photographed at three sites namely Yelung pass (4,956 m), Tsho Rolpa (4,536 m) and Dudhkunda ridgeline (5,091 m). The red fox was the most frequent predator in Rolwaling while stone marten Martes foina, yellow-throated marten Martes flabigula, and yellow-belied weasel Mustella katiyah were captured occasionally. Photo capture rate index PCRI per 100 trap nights was calculated for all identifiable species where snow leopard and wolf had PCRI values of 0.35 and 0.71, respectively. The Cumulative PCRI values suggest a pyramid shaped community structure in Rolwaling with small herbivores (including game birds) with broad base (PCRI 22.29) followed by large herbivores (10.38) and small-medium sized carnivores (6.96). The top predators (snow leopard and wolf) produces 1.06 photographic rate index. The declaration of Gaurishankar conservation area and continuous efforts from conservation area management committees, strict cultural rules from local Buddhist community in the valley are found possibly favoured the recolonization of the wolf and frequent visits by snow leopard. |
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1669 |
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Smith, H. F., Townsend, K. E. B., Adrian, B., Levy, S., Marsh, S., Hassur, R., Manfredi, K., Echols, M. S. |
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Functional Adaptations in the Forelimb of the Snow Leopard (Panthera uncia) |
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2021 |
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Integrative and Comparative Biology |
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61 |
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5 |
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1852-1866 |
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The snow leopard (Panthera uncia) is anatomically and physiologically adapted for life in the rocky terrain of alpine zones in Central and South Asia. Panthera uncia is scansorial, and typically hunts solitarily by using overhead ambush of prey, rather than the typical stalking pattern of other large pantherines. In this study, we conducted dissections, detailed documentation, and illustrated the forelimb anatomy of two adult P. uncia specimens (1M/1F). Qualitative and quantitative data revealed an intriguing combination of functional adaptations illustrating a balance between the diverse demands of head-first descent, pouncing, climbing across rocky terrain, restraint of large prey, rapid pursuit, and navigating deep snow. In many forelimb proportions, P. uncia is intermediate between the cursorial Acinonyx jubatus (cheetah) and the scansorial forest dwelling Panthera onca (jaguar). Enlarged scapular and pectoral musculature provide stability to the shoulder girdle during grappling with large prey, as well as support during jumping and climbing. A small, unarticulated bony clavicle may provide greater stability to the forelimb, while still allowing flexibility. In the brachium and antebrachium of P. uncia, there is a functional compromise between the powerful grip needed for grasping large prey and the stability necessary for rapid pursuit of prey over uneven, rocky terrain. A unique bifurcation in the tendon of m. biceps brachii may provide additional functional stability at the radiohumeral joint. Intrinsic muscles of the palmar manus are broad and fleshy, acting as an enlarged surface area to evenly distribute body weight while walking on soft snow. However, muscles that act to provide fine manual manipulation are reduced, as in other large prey specialists. Overall, P. uncia displays morphological adaptive parallels with scansorial, large prey spe- cializing pantherines, such as P. onca, while also showing adaptations for running. |
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1670 |
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Esson, C. L. |
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A One Health approach to investigating the health and prevalence of zoonotic pathogens in snow leopards, sympatric wildlife, domestic animals and humans in the South Gobi Desert in Mongolia |
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2018 |
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PhD Thesis |
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The endangered Snow leopard (Panthera uncia) inhabits the high mountain regions through central Asia and is subjected to numerous threats including poaching for traditional Chinese medicine, retribution killing for preying on domestic stock, and habitat fragmentation. However the occurrence and impact of disease on snow leopard populations is unknown. As emerging infectious diseases of wildlife can be an insidious yet important cause of population decline due to mortality or reproductive failure, my study aimed initially to gain knowledge of pathogens circulating among wild and domestic hosts in this region. I used a broad One Health approach to survey a range of species to collect data on disease occurrence that would be useful in improving human and livestock health, as well as snow leopard conservation.
This study is set in the Tost Mountains of the South Gobi Desert of Mongolia and was prompted due to the unexplained deaths of four snow leopards detected within a short timeframe during an ecological study by members of the Snow Leopard Trust. However, investigating disease occurrence in remote, rare and endangered species is a challenge due to inaccessibility of sites, difficulty of capture, and processing samples without facilities.
A One Health approach uses multidisciplinary expertise such as ecological, medical and veterinary, to understand host, pathogen and environmental disease factors. This approach is especially useful for diseases that transfer between people, domestic animals and wildlife. As snow leopards are a rare and elusive species, my surveys were aimed at assessing pathogens circulating in snow leopards as well as in sympatric wild and domestic animals. I collected samples from the following hosts: snow leopards – the target species; rodents which are ubiquitous over the study area and are a suitable sentinel species; ibex which are a native ungulate and natural prey species of the snow leopard; domestic goats which are also a prey species of the snow leopard; free-ranging domestic dogs which interact with the goats. The local indigenous people interact with all these species including snow leopards, mostly via retribution killing. Water samples were also collected from waterholes and wells, which are communal meeting places as drinking sources for all species, hence enabling pathogen exchange. Samples collected included blood samples, faecal samples or rectal swabs and ectoparasites if present. These samples were transported to laboratories in Sweden and Belgium where I conducted diagnostic assays for zoonotic pathogens that are present in other regions of Mongolia and impact the health of humans and animals. I used enzyme- linked immune assay (ELISA), polymerase chain reaction (PCR) and next-generation sequencing (NGS) for pathogens including Coxiella burnetii, Toxoplasma gondii, Leptospira spp., Brucella spp., Yersinia pestis and tick borne encephalitis virus. Serovars of Leptospira were elucidated using microscopic agglutination tests (MAT). The dog blood samples were also tested for canine distemper virus. Ticks, faeces, rectal swabs and water were tested for bacteria, Echinococcus, Giardia and Cryptosporidium using PCR and NGS.
Health records for humans and animals in the region were not available so, in addition to testing animal samples, I used questionnaire surveys to obtain information on perceptions of the herders concerning health of their families, their domestic animals and wildlife. Questions also assessed preventative health management and treatments used.
Over three field trips I caught and sampled twenty snow leopards, 177 rodents (8 species), 41 dogs and 270 goats. I also sampled 11 waterholes/wells, and preserved 18 ticks, hundreds of fleas and collected faecal samples from ibex.
Most animals that were sampled and examined clinically appeared in good health, but the serosurvey revealed a moderate to high level of exposure to serious pathogens: C. burnetii, T. gondii and Leptospira spp. There were no published reports of human infections with these pathogens in the study area, which is likely due to a lack of testing.
Snow leopards had the highest prevalence of C. burnetii antibodies (25%), followed by rodents (16%), dogs (10%) and goats (9.5%). Goats had the highest prevalence of T. gondii antibodies (90%), dogs (66%), snow leopards (20%) and rodents (16%). Rodents had the highest prevalence of Leptospira spp. (34%), followed by snow leopards (20%) and dogs (5%). Serovars interrogans Australis was identified in the rodents and snow leopards and interrogans Ictohaemorrhagiae was identified in the rodents and dogs. Other serovars were also present from the results of the ELISA but did not match those listed in the MAT panel, so could not be identified. Goats were not tested for infection with leptospirosis. Brucella was not identified in the goats even though it occurs at high prevalence in stock in the rest of Mongolia where it is a large health and economic concern. In rodents, the zoonotic Puumala and Seoul hantavirus were identified for the first time in Mongolia. Analysis of data from rodents showed the pathogens detected (C. burnetii, T.gondii, Hanta virus and Leptospira spp.) differed significantly in prevalence, with a strong year effect driven mainly by Leptospira, which increased in prevalence across the three year study period. Toxoplasma gondii differed slightly in prevalence among rodent species. There was no significant difference in prevalence of interaction of pathogens among years or rodent species.
Poor health was detected in goats with 10 out of the 14 goats tested via haematology and biochemistry being anaemic with haematocrits less than 20%. Haematology and biochemistry values for the other animal species appeared normal. I established haematology and biochemistry reference tables for two rodent species – red-cheeked ground squirrels and jerboas.
Water samples were negative for serious pathogens. Fleas were negative for Yersinia pestis. However, ticks were positive for several genera of potential zoonoses, including Anaplasma, Bacillus, Coxiella, Clostridia, Francisella, Rickettsia, Staphylococcus, Streptococcus and Yersinia. Faecal samples were also positive for genera of potentially zoonotic bacteria including those listed above plus Bacteroides, Bordetella, Campylobacter and Enterococcus.
Results from the two questionnaire surveys revealed the main reported illness in people were colds and flu. However, the local doctor also reported hepatitis as common. She also said that the local people contracted brucellosis whereas I did not identify this pathogen in their livestock. The herders thought their main loss of stock was from predation, with wolves identified as the main predator and snow leopards as the second. Other causes of stock loss perceived as important were adverse climatic conditions such as drought or severe winters while infectious disease was not a concern. Results from these surveys also highlighted gaps in health care for humans and livestock, especially around vaccination and parasite treatments.
In summary, I found that snow leopards and other wild and domestic animals within the study area tested positive for previous exposure to several important zoonotic pathogens. These pathogens were likely circulating among species via contamination of pasture and via predation and have potential to cause illness and reproductive loss. However, I detected no adverse effects on the health of the animals due to infection with these pathogens, and observed no related mortality or illness during my field trips. Hence the deaths of the four snow leopards that were the impetus for my study have not been explained, and monitoring and surveillance of this population should continue.
My findings on wildlife and domestic animal pathogens have relative importance to improving productivity of livestock and the health of the nomadic herders. I recommend improving the health of goats through vaccination and anti-parasite programmes, which will improve their fecundity and survival and thus increase herder income. These programmes will also have flow-on effects to improve the health of the native ungulates that share the grazing areas by decreasing the risk of pathogen transfer between them and also to the snow leopards that prey on them. Demonstrating the importance of herd health may also help mitigate herder wildlife conflict as increased productivity could decrease the perceived importance of predation on herd numbers.
Coxiella burnetii and Leptospires spp are a likely cause of illness in people, despite the lack of reported diagnoses. As rodents had a moderate prevalence of all pathogens tested and inhabit the gers of the local people, it is important to raise awareness of the risk of pathogen transfer to people via rodent excrement contaminating stored food and eating utensils. Risk of human exposure to pathogens during goat slaughter can also be reduced via improved hygiene practices.
By identifying pathogens with broad host ranges in a variety of species in this remote mountainous region, my study provides the basis for understanding health risks to wildlife, domestic animals and humans. Consideration of likely transmission routes for pathogens between species can inform current recommendations to improve health, productivity and hence conservation, of the endangered snow leopard – The Ghost of the Mountain. |
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1744 |
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Nature Conservation Division; Department of Forests and Park Services; Ministry of Energy and Natural Resources; Royal Government of Bhutan |
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Snow Leopard Status in Bhutan – National Snow Leopard Survey Report 2022-2023 |
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2023 |
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NSLS Report |
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1-82 |
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The National Snow Leopard Survey (NSLS) report 2022-2023 provides an updated status of the snow leopard in Bhutan. The report is an outcome of the camera trapping survey spanning five protected areas namely Jigme Khesar Strict Nature Reserve, Jigme Dorji National Park, Wangchuck Centennial National Park, Bumdeling Wildlife Sanctuary and Jigme Singye Wangchuck National Park and two Divisional Forest Offices of Paro and Thimphu. A total of 310 camera stations were setup across the field sites that accumulated a survey effort of 22,636 trap nights, with over 10,000 images of snow leopards captured. A careful review of 476 images identified 96 adult individuals and 10 cubs across the landscape. Bayesian-based Spatially Explicit Capture Recapture (SECR) modelling estimated 134 snow leopards, as compared to the 2016 baseline of 96 individuals. Snow leopard density was estimated at 1.34 snow leopards per 100 km2 with the possibility of higher density in western Bhutan than in central and eastern Bhutan. Habitat distribution modeling also suggests more suitable habitats in western Bhutan as compared to other regions. |
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1740 |
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Shao, X., Lu, Q., Xiong, M., Bu, H., Shi, X., Wang, D., Zhao, J., Li, S., Yao, M. |
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Prey partitioning and livestock consumption in the world’s richest large carnivore assemblage |
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2021 |
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Current Biology |
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31 |
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4887-4897 |
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Large mammalian carnivores have undergone catastrophic declines during the Anthropocene across the world. Despite their pivotal roles as apex predators in food webs and ecosystem dynamics, few detailed di- etary datasets of large carnivores exist, prohibiting deep understanding of their coexistence and persistence in human-dominated landscapes. Here, we present fine-scaled, quantitative trophic interactions among sym- patric carnivores from three assemblages in the Mountains of Southwest China, a global biodiversity hotspot harboring the world’s richest large-carnivore diversity, derived from DNA metabarcoding of 1,097 fecal sam- ples. These assemblages comprise a large-carnivore guild ranging from zero to five species along with two mesocarnivore species. We constructed predator-prey food webs for each assemblage and identified 95 vertebrate prey taxa and 260 feeding interactions in sum. Each carnivore species consumed 6–39 prey taxa, and dietary diversity decreased with increased carnivore body mass across guilds. Dietary partitioning was more evident between large-carnivore and mesocarnivore guilds, yet different large carnivores showed divergent proportional utilization of different-sized prey correlating with their own body masses. Large car- nivores particularly selected livestock in Tibetan-dominated regions, where the indigenous people show high tolerance toward wild predators. Our results suggest that dietary niche partitioning and livestock subsidies facilitate large-carnivore sympatry and persistence and have key implications for sustainable conservation promoting human-carnivore coexistence. |
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