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Waits, L. P., Buckley-Beason, V. A., Johnson, W. E., Onorato, D., & McCarthy, T. (2006). A select panel of polymorphic microsatellite loci for individual identification of snow leopards (Panthera uncia)
(Vol. 7).
Abstract: Snow leopards (Panthera uncia) are elusive endangered carnivores found in remote mountain regions of Central Asia. New methods for identifying and counting snow leopards are needed for conservation and management efforts. To develop molecular genetic tools for individual identification of hair and faecal samples, we screened 50 microsatellite loci developed for the domestic cat (Felis catus) in 19 captive snow leopards. Forty-eight loci were polymorphic with numbers of alleles per locus ranging from two to 11. The probability of observing matching genotypes for unrelated individuals (2.1 x10-11) and siblings (7.5x10-5) using the 10 most polymorphic loci was low, suggesting that this panel would easily discriminate among individuals in the wild.
Keywords: identification; leopard; leopards; microsatellites,noninvasive genetic sampling,Panthera uncia,snow leopard; panthera; Panthera-uncia; panthera uncia; snow; snow-leopard; snow-leopards; snow leopard; snow leopards; uncia; endangered; carnivores; carnivore; mountain; region; central; Central Asia; asia; methods; conservation; management; Molecular; individual identification; Hair; domestic; cat; felis; captive; number; probability; using; wild
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Wei, L., Wu, X., & Jiang, Z. (2008). The complete mitochondrial genome structure of snow leopard Panthera uncia.
Abstract: The complete mitochondrial genome (mtDNA) of snow leopard Panthera uncia was obtained by using the polymerase chain reaction (PCR) technique based on the PCR fragments of 30 primers we designed. The entire mtDNA sequence was 16 773 base pairs (bp) in length, and the base composition was: A-5,357ª“,Ž+bp (31.9%); C-4,444ª”,Ž+bp (26.5%); G-2,428ª“,Ž+bp (14.5%); T-4,544ª”,Ž+bp (27.1%). The structural characteristics [0] of the P. uncia mitochondrial genome were highly similar to these of Felis catus, Acinonyx jubatus, Neofelis nebulosa and other mammals. However, we found several distinctive features of the mitochondrial genome of Panthera unica. First, the termination codon of COIII was TAA, which differed from those of F. catus, A. jubatus and N. nebulosa. Second, tRNASer (AGY), which lacked the ''DHU'' arm, could not be folded into the typical cloverleaf-shaped structure. Third, in the control region, a long repetitive sequence in RS-2 (32ª“,Ž+bp) region was found with 2 repeats while one short repetitive segment (9ª”,Ž+bp) was found with 15 repeats in the RS-3 region. We performed phylogenetic analysis based on a 3 816ª",Ž+bp concatenated sequence of 12S rRNA, 16S rRNA, ND2, ND4, ND5, Cyt b and ATP8 for P. uncia and other related species, the result indicated that P. uncia and P. leo were the sister species, which was different from the previous findings. (c) 2008 Springer Science+Business Media B.V.
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Xu, A., Jiang, Z., Li, C., Guo, J., Da, S., Cui, Q., et al. (2008). Status and conservation of the snow leopard Panthera uncia in the Gouli Region, Kunlun Mountains, China (Vol. 42).
Abstract: The elusive snow leopard Panthera unica is a rare and little studied species in China. Over 1 March-15 May 2006 we conducted a survey for the snow leopard in the Gouli Region, East Burhanbuda Mountain, Kunlun Mountains, Qinghai Province, China, in an area of c. 300 km2 at altitudes of 4,000-4,700 m. We surveyed 29 linear transects with a total length of c. 440 km, and located a total of 72 traces (pug marks, scrapes and urine marks) of snow leopard along four of the transects. We obtained eight photographs of snow leopard from four of six camera traps. We also recorded 1,369 blue sheep, 156 Tibetan gazelles, 47 argali, 37 red deer and one male white-lipped deer. We evaluated human attitudes towards snow leopard by interviewing the heads of 27 of the 30 Tibetan households living in the study area. These local people did not consider that snow leopard is the main predator of their livestock, and thus there is little retaliatory killing. Prospects for the conservation of snow leopard in this area therefore appear to be good. We analysed the potential threats to the species and propose the establishment of a protected area for managing snow leopard and the fragile alpine ecosystem of this region. (c) 2008 Fauna & Flora International.
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Yu, N. Z. C., Wang, X., He, G., Zhang, Z., Zhang, A., Lu, W., et al. (1996). A revision of genus Uncia Gray, 1854 based on mitochondrial DNA restriction site maps. Acta Theriologica Sinica, 16(2), 105–108.
Abstract: The Snow leopard (Panthera uncia) is one of the most threatened wild big cats within its range of distribution, however, the question of its systematic status is a matter of debate. Is it a member of genus Panthera, or is it in its own genus (Uncia)? The analysis of genetic difference at the DNA level may provide useful data to clarify the issue. In the present study, ten hexanucleotide-specific restriction endonucleases were used to evaluate the patterns of mitochondrial DNA variation between the Snow leopard and leopard (P. pardus). The molecular size of mtDNA from the two species was about 16.5 kb. Ten enzymes surveyed 32-34 restriction sites, which corresponded to 192 apprx 204 base pairs, or 1.16% apprx 1.24% of the total mtDNA molecule. A total of 45 restriction sites were mapped; of these sites, twenty-four, which correspond to 53.3% of the total sites, were variable. The sequence divergence between them was 0.075 33, which was undoubtedly in the species-level distinction but did not reach the genus level. Therefore, the Snow leopard should be placed in the genus Panthera rather than in its own ganus. It also seems reasonable to recognize Uncia as a valid subgenus. This conclusion not only support but also supplement the viewpoint of Simpson who treated Uncia as a subgenus within Panthera.
Keywords: taxonomy; uncia; panthera; snow-leopard; snow leopard; browse; 1350; Chinese
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Johansson, O., Ullman, K., Lkhagvajav, P., Wiseman, M.,
Malmsten, J., Leijon, M. (2020). Detection and Genetic Characterization of Viruses Present in
Free-Ranging Snow Leopards Using Next-Generation Sequencing. Frontiers in Veterinary Science, 7(645), 1–9.
Abstract: Snow leopards inhabit the cold, arid environments of the high
mountains of South and Central Asia. These living conditions likely affect the abundance and composition of microbes with the capacity to infect these animals. It is important to investigate the microbes that snow leopards are exposed to detect infectious disease threats and define a baseline for future changes that may impact the health of this endangered felid. In this work, next-generation sequencing is used to investigate the fecal (and in a few cases serum) virome of seven snow leopards from the Tost Mountains of Mongolia. The viral species to which the greatest number of sequences reads showed high similarity was rotavirus. Excluding one animal with overall very few sequence reads, four of six animals (67%) displayed evidence of rotavirus infection. A serum sample of a male and a rectal swab of a female snow leopard produced sequence reads identical or closely similar to felid herpesvirus 1, providing the first evidence that this virus infects snow leopards. In addition, the rectal swab from the same female also displayed sequence reads most similar to feline papillomavirus 2, which is the first evidence for this virus infecting snow leopards. The rectal swabs from all animals also showed evidence for the presence of small circular DNA viruses, predominantly Circular Rep-Encoding Single-Stranded (CRESS) DNA viruses and in one case feline anellovirus. Several of the viruses implicated in the present study could affect the health of snow leopards. In animals which are under environmental stress, for example, young dispersing individuals and lactating females, health issues may be exacerbated by latent virus infections. |
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Johansson, O., Ausilio, G., Low, M., Lkhagvajav, P., Weckworth,
B., Sharma, K. (2020). The timing of breeding and independence for snow leopard females
and their cubs. Mammalian Biology, .
Abstract: Significant knowledge gaps persist on snow leopard demography
and reproductive behavior. From a GPS-collared population in Mongolia, we estimated the timing of mating, parturition and independence. Based on three mother–cub pairs, we describe the separation phase of the cub from its mother as it gains independence. Snow leopards mated from January–March and gave birth from April–June. Cubs remained with their mother until their second winter (20–22 months of age) when cubs started showing movements away from their mother for days at a time. This initiation of independence appeared to coincide with their mother mating with the territorial male. Two female cubs remained in their mothers’ territory for several months after initial separation, whereas the male cub quickly dispersed. By comparing the relationship between body size and age of independence across 11 solitary, medium-to-large felid species, it was clear that snow leopards have a delayed timing of separation compared to other species. We suggest this may be related to their mating behavior and the difficulty of the habitat and prey capture for juvenile snow leopards. Our results, while limited, provide empirical estimates for understanding snow leopard ecology and for parameterizing population models. |
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Korablev, M. P., Poyarkov, A. D., Karnaukhov, A. S., Zvychaynaya, E. Y., Kuksin, A. N., Malykh, S. V., Istomov, S. V., Spitsyn, S. V., Aleksandrov, D. Y., Hernandez-Blanco, J. A., Munkhtsog, B., Munkhtogtokh, O., Putintsev, N. I., Vereshchagin, A. S., Becmurody, A., Afzunov, S., Rozhnov, V. V. (2021). Large-scale and fine-grain population structure and genetic diversity of snow leopards (Panthera uncia Schreber, 1776) from the northern and western parts of the range with an emphasis on the Russian population. Conservation Genetics, .
Abstract: The snow leopard (Panthera uncia Schreber, 1776) population in Russia and Mongolia is situated at the northern edge of the range, where instability of ecological conditions and of prey availability may serve as prerequisites for demographic instability and, consequently, for reducing the genetic diversity. Moreover, this northern area of the species distribution is connected with the western and central parts by only a few small fragments of potential habitats in the Tian-Shan spurs in China and Kazakhstan. Given this structure of the range, the restriction of gene flow between the northern and other regions of snow leopard distribution can be expected. Under these conditions, data on population genetics would be extremely important for assessment of genetic diversity, population structure and gene flow both at regional and large-scale level. To investigate large-scale and fine-grain population structure and levels of genetic diversity we analyzed 108 snow leopards identified from noninvasively collected scat samples from Russia and Mongolia (the northern part of the range) as well as from Kyrgyzstan and Tajikistan (the western part of the range) using panel of eight polymorphic microsatellites. We found low to moderate levels of genetic diversity in the studied populations. Among local habitats, the highest heterozygosity and allelic richness were recorded in Kyrgyzstan (He = 0.66 ± 0.03, Ho = 0.70 ± 0.04, Ar = 3.17) whereas the lowest diversity was found in a periphery subpopulation in Buryatia Republic of Russia (He = 0.41 ± 0.12, Ho = 0.29 ± 0.05, Ar = 2.33). In general, snow leopards from the western range exhibit greater genetic diversity (He = 0.68 ± 0.04, Ho = 0.66 ± 0.03, Ar = 4.95) compared to those from the northern range (He = 0.60 ± 0.06, Ho = 0.49 ± 0.02, Ar = 4.45). In addition, we have identified signs of fragmentation in the northern habitat, which have led to significant genetic divergence between subpopulations in Russia. Multiple analyses of genetic structure support considerable genetic differentiation between the northern and western range parts, which may testify to subspecies subdivision of snow leopards from these regions. The observed patterns of genetic structure are evidence for delineation of several management units within the studied populations, requiring individual approaches for conservation initiatives, particularly related to translocation events. The causes for the revealed patterns of genetic structure and levels of genetic diversity are discussed.
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Bagchi, S., Sharma, R. K., Bhatnagar, Y.V. (2020). Change in snow leopard predation on livestock after revival of wild prey in the Trans-Himalaya. Wildlife Biology, , 1–11.
Abstract: Human–wildlife conflict arising from livestock-losses to large carnivores is an important challenge faced by conservation. Theory of prey–predator interactions suggests that revival of wild prey populations can reduce predator’s dependence on livestock in multiple-use landscapes. We explore whether 10-years of conservation efforts to revive wild prey could reduce snow leopard’s Panthera uncia consumption of livestock in the coupled human-and-natural Trans-Himalayan ecosystem of northern India. Starting in 2001, concerted conservation efforts at one site (intervention) attempted recovery of wild- prey populations by creating livestock-free reserves, accompanied with other incentives (e.g. insurance, vigilant herding). Another site, 50km away, was monitored as status quo without any interventions. Prey remains in snow leopard scats were examined periodically at five-year intervals between 2002 and 2012 to determine any temporal shift in diet at both sites to evaluate the effectiveness of conservation interventions. Consumption of livestock increased at the status quo site, while it decreased at the intervention-site. At the intervention-site, livestock-consumption reduced during 2002–2007 (by 17%, p = 0.06); this effect was sustained during the next five-year interval, and it was accompanied by a persistent increase in wild prey populations. Here we also noted increased predator populations, likely due to immigration into the study area. Despite the increase in the predator population, there was no increase in livestock-consumption. In contrast, under status quo, dependence on livestock increased during both five-year intervals (by 7%, p=0.08, and by 16%, p=0.01, respectively). These contrasts between the trajectories of the two sites suggest that livestock-loss can potentially be reduced through the revival of wild prey. Further, accommodating counter-factual scenarios may be an important step to infer whether conservation efforts achieve their targets, or not.
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Koju. N. P,, Bashyal, B., Pandey, B. P., Shah, S. N., Thami, S., Bleisch, W. V. (2020). First camera-trap record of the snow leopard Panthera uncia in Gaurishankar Conservation Area, Nepal. Oryx, , 1–4.
Abstract: The snow leopard Panthera uncia is the flagship species of the high mountains of the Himalayas. There is po- tentially continuous habitat for the snow leopard along the northern border of Nepal, but there is a gap in information about the snow leopard in Gaurishankar Conservation Area. Previous spatial analysis has suggested that the Lamabagar area in this Conservation Area could serve as a transbound- ary corridor for snow leopards, and that the area may con- nect local populations, creating a metapopulation. However, there has been no visual confirmation of the species in Lamabagar. We set !! infrared camera traps for " months in Lapchi Village of Gaurishankar Conservation Area, where blue sheep Pseudois nayaur, musk deer Moschus leucogaster and Himalayan tahr Hemitragus jemlahicus, all snow leopard prey species, had been observed. In November #$!% at &,!$$ m, ' km south-west of Lapchi Village, one camera recorded three images of a snow leopard, the first photographic evidence of the species in the Conservation Area. Sixteen other species of mammals were also recorded. Camera-trap records and sightings indicated a high abun- dance of Himalayan tahr, blue sheep and musk deer. Lapchi Village may be a potentially important corridor for snow leopard movement between the east and west of Nepal and northwards to Quomolongma National Park in China. However, plans for development in the region present in- creasing threats to this corridor. We recommend develop- ment of a transboundary conservation strategy for snow leopard conservation in this region, with participation of Nepal, China and international agencies.
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Atzeni, L., Cushman, S. A., Bai, D., Wang, J., Chen, P., Shi,
K., Riordan, P. (2020). Meta-replication, sampling bias, and multi-scale model selection:
A case study on snow leopard (Panthera uncia) in western China. Ecology and Evolution, , 1–27.
Abstract: Replicated multiple scale species distribution models (SDMs)
have become increasingly important to identify the correct variables determining species distribution and their influences on ecological responses. This study explores multi-scale habitat relationships of the snow leopard (Panthera uncia) in two study areas on the Qinghai–Tibetan Plateau of western China. Our primary objectives were to evaluate the degree to which snow leopard habitat relationships, expressed by predictors, scales of response, and magnitude of effects, were consistent across study areas or locally landcape-specific. We coupled univariate scale optimization and the maximum entropy algorithm to produce multivariate SDMs, inferring the relative suitability for the species by ensembling top performing models. We optimized the SDMs based on average omission rate across the top models and ensembles’ overlap with a simulated reference model. Comparison of SDMs in the two study areas highlighted landscape-specific responses to limiting factors. These were dependent on the effects of the hydrological network, anthropogenic features, topographic complexity, and the heterogeneity of the landcover patch mosaic. Overall, even accounting for specific local differences, we found general landscape attributes associated with snow leopard ecological requirements, consisting of a positive association with uplands and ridges, aggregated low-contrast landscapes, and large extents of grassy and herbaceous vegetation. As a means to evaluate the performance of two bias correction methods, we explored their effects on three datasets showing a range of bias intensities. The performance of corrections depends on the bias intensity; however, density kernels offered a reliable correction strategy under all circumstances. This study reveals the multi-scale response of snow leopards to environmental attributes and confirms the role of meta-replicated study designs for the identification of spatially varying limiting factors. Furthermore, this study makes important contributions to the ongoing discussion about the best approaches for sampling bias correction. |