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Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. (2014). Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples. Conservation Genetic Resource, 6(2), 369:373.
Abstract: Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
endangered species
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Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. (2014). Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples. Conservation Genetic Resource, 6(2), 369:373.
Abstract: Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
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Janecka, J. E., Alves, P., Karmacharya, D., Samsel, N., Cheng, E., Tallmom, D., Schwartz, M. (2013). Wildlife Genetics in Mountainous Rugged Asian Landscapes: Methods, Applications and Examples. In Wildlife Research Techniques in rugged Mountainous Asian Landscapes (pp. 44–91).
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Rodgers, T. W., Janecka, J. E. (2013). Applications and techniques for non-invasive faecal genetics research in felid conservation.
Abstract: Non-invasive genetic techniques utilising DNA extracted from faeces hold great promise for felid conservation research. These methods can be used to establish species
distributions, model habitat requirements, analyse diet, estimate abundance and population density, and form the basis for population, landscape and conservation genetic analyses. Due to the elusive nature of most felid species, non-invasive genetic methods have the potential to provide
valuable data that cannot be obtained with traditional observational or capture techniques. Thus, these methods are particularly valuable for research and conservation of endangered
felid species. Here, we review recent studies that use non-invasive faecal genetic techniques to survey or study wild felids; provide an overview of field, laboratory and analysis techniques; and offer suggestions on how future non-invasive genetic studies can be expanded or improved to more effectively support conservation.
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Alexander, J. S., Gopalswamy, A. M., Shi, K., Riordan, P. (2015). Face Value: Towards Robust Estimates of Snow Leopard Densities. Plos One, .
Abstract: When densities of large carnivores fall below certain thresholds, dramatic ecological effects
can follow, leading to oversimplified ecosystems. Understanding the population status of
such species remains a major challenge as they occur in low densities and their ranges are
wide. This paper describes the use of non-invasive data collection techniques combined
with recent spatial capture-recapture methods to estimate the density of snow leopards
Panthera uncia. It also investigates the influence of environmental and human activity indicators
on their spatial distribution. A total of 60 camera traps were systematically set up during
a three-month period over a 480 km2 study area in Qilianshan National Nature Reserve,
Gansu Province, China. We recorded 76 separate snow leopard captures over 2,906 trapdays,
representing an average capture success of 2.62 captures/100 trap-days. We identified
a total number of 20 unique individuals from photographs and estimated snow leopard
density at 3.31 (SE = 1.01) individuals per 100 km2. Results of our simulation exercise indicate
that our estimates from the Spatial Capture Recapture models were not optimal to
respect to bias and precision (RMSEs for density parameters less or equal to 0.87). Our
results underline the critical challenge in achieving sufficient sample sizes of snow leopard
captures and recaptures. Possible performance improvements are discussed, principally by
optimising effective camera capture and photographic data quality.
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Taubmann, J., Sharma, K., Uulu, K Z., Hines, J. E., Mishra, C. (2015). Status assessment of the Endangered snow leopard Panthera uncia and other large mammals in the Kyrgyz Alay, using community knowledge corrected for imperfect detection. Fauna & Flora International, , 1–11.
Abstract: The Endangered snow leopard Panthera uncia occurs
in the Central Asian Mountains, which cover c.  million
km. Little is known about its status in the Kyrgyz Alay
Mountains, a relatively narrow stretch of habitat connecting
the southern and northern global ranges of the species. In
 we gathered information on current and past (,
the last year of the Soviet Union) distributions of snow leopards
and five sympatric large mammals across , km
of the Kyrgyz Alay.We interviewed  key informants from
local communities. Across  -km grid cells we obtained
, and  records of species occurrence (site
use) in  and , respectively. The data were analysed
using themulti-season site occupancy framework to incorporate
uncertainty in detection across interviewees and time
periods. High probability of use by snow leopards in the past
was recorded in .% of the Kyrgyz Alay. Between the two
sampling periods % of sites showed a high probability of
local extinction of snow leopard. We also recorded high
probability of local extinction of brown bear Ursus arctos
(% of sites) and Marco Polo sheep Ovis ammon polii
(% of sites), mainly in regions used intensively by people.
Data indicated a high probability of local colonization by
lynx Lynx lynx in % of the sites. Although wildlife has
declined in areas of central and eastern Alay, regions in
the north-west, and the northern and southern fringes
appear to retain high conservation value.
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Alexander, J. S., Shi, K., Tallents, L. A., Riordan, P. (2015). On the high trail: examining determinants of site use by the Endangered snow leopard Panthera uncia in Qilianshan, China. Oryx, (Fauna & Flora International), 1–8.
Abstract: Abstract There is a need for simple and robust techniques for assessment and monitoring of populations of the Endangered snow leopard Panthera uncia to inform the de- velopment of action plans for snow leopard conservation. We explored the use of occupancy modelling to evaluate the influence of environmental and anthropogenic features on snow leopard site-use patterns. We conducted a camera trap survey across  km in Gansu Province, China, and used data from  camera traps to estimate probabilities of site use and detection using the single season occupancy model. We assessed the influence of three covariates on site use by snow leopards: elevation, the presence of blue sheep Pseudois nayaur and the presence of human disturb- ance (distance to roads). We recorded  captures of snow leopards over , trap-days, representing a mean capture success of . captures per  trap-days. Elevation had the strongest influence on site use, with the probability of site use increasing with altitude, whereas the influence of presence of prey and distance to roads was relatively weak. Our findings indicate the need for practical and robust tech- niques to appraise determinants of site use by snow leo- pards, especially in the context of the limited resources available for such work.
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Alexander, J. S., Cusack, J. J., Pengju, C, Kun, S., Riordan, P. (2015). Conservation of snow leopards: spill-over benefits for other carnivores? Oryx, (Fauna & Flora International), 1–5.
Abstract: In high-altitude settings of Central Asia the
Endangered snow leopard Panthera uncia has been recognized
as a potential umbrella species. As a first step in assessing
the potential benefits of snow leopard conservation for
other carnivores, we sought a better understanding of the
presence of other carnivores in areas occupied by snow leopards
in China’s Qilianshan National Nature Reserve. We
used camera-trap and sign surveys to examine whether
other carnivores were using the same travel routes as snow
leopards at two spatial scales. We also considered temporal
interactions between species. Our results confirm that other
carnivores, including the red fox Vulpes vulpes, grey wolf
Canis lupus, Eurasian lynx Lynx lynx and dhole Cuon alpinus,
occur along snow leopard travel routes, albeit with low detection
rates. Even at the smaller scale of our camera trap survey
all five carnivores (snow leopard, lynx, wolf, red fox and
dhole) were observed. Kernel density estimates suggested a
high degree of temporal overlap between the snow leopard
and the fox, and the snow leopard and the lynx, as indicated
by high overlap coefficient estimates. There is an opportunity
to consider protective measures at the local scale that would
benefit various species simultaneously. However, it should
also be recognized that snow leopard conservation efforts
could exacerbate human–wildlife conflicts through their protective
effect on other carnivore species.
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Chen, P., Gao, Y., Lee, A. T. L., Cering, L., Shi, K., Clark, S. G. (2016). Human–carnivore coexistence in Qomolangma (Mt. Everest) Nature Reserve, China: Patterns and compensation. Biological Conservation, (197), 18–26.
Abstract: Livestock depredation by large carnivores is frequently reported in Qomolangma (Mt. Everest) National Nature Reserve, Tibet Autonomous Region of China. Seeking to minimize conflicts, we assessed depredation patterns and ways to upgrade the compensation program. We gathered 9193 conflict records over 2011–2013 to determine the extent and tempo-spatial patterns of the depredation.Weinterviewed 22 local officials and 94 residents to learn their views on depredations and to assess the adequacy of compensation. Data showed that wolves (Canis lupus), lynx (Lynx lynx), and snowleopards (Panthera uncia)were themajor livestock predators. Total livestock
loss accounted for 1.2% of the entire stockholding (n=846,707) in the region. Wolves and lynx tended to take sheep and goats,whereas snowleopards favored yaks and cattle in relation to their proportional abundance. Predation mostly occurred in March through July. Livestock depredation by all predators when combined was best explained by terrain ruggedness and density of small- and large-bodied livestock. Temporal and spatial predation patterns variedamong carnivores.Most respondents (74%) attributed depredation causes to an increase in carnivore abundance. Only 7% blamed lax livestock herding practice for predation losses. Five percent said that
predation was the result of livestock population increases, while 11% had no idea. The compensation scheme was found to be flawed in all aspects—predation verification, application procedure, compensation standard, operational resource allocation, making payment, and other problems. To enhance management for human–carnivore coexistence, we recommend a problem-oriented, integrated, adaptive approach that targets the complex social context of the conflict and addresses the interconnected functions of decision-making process.
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Alexander, S., A., Zhang, C., Shi, K., Riordan, P. (2016). A granular view of a snow leopard population using camera traps in Central China. Biological Conservation, (197), 27–31.
Abstract: Successful conservation of the endangered snow leopard (Panthera uncia) relies on the effectiveness of monitoring programmes. We present the results of a 19-month camera trap survey effort, conducted as part of a longterm study of the snow leopard population in Qilianshan National Nature Reserve of Gansu Province, China. Weassessed the minimumnumber of individual snowleopards and population density across different sampling periods using spatial capture–recapture methods. Between 2013–2014, we deployed 34 camera traps across an area of 375 km2, investing a total of 7133 trap-days effort. Weidentified a total number of 17–19 unique individuals
from photographs (10–12 adults, five sub-adults and two cubs). The total number of individuals identified and estimated density varied across sampling periods, between 10–15 individuals and 1.46–3.29 snow leopards per 100 km2 respectively. We demonstrate that snow leopard surveys of limited scale and conducted over short sampling periods only present partial views of a dynamic and transient system.We also underline the challenges in achieving a sufficient sample size of captures and recaptures to assess trends in snow leopard population size and/or density for policy and conservation decision-making
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