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Zhang, F.; Jiang, Z.; Zeng, Y.; McCarthy, T. |
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Title |
Development of primers to characterize the mitochondrial control region of the snow leopard (Uncia uncia) |
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Miscellaneous |
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2007 |
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Molecular Ecology Notes |
Abbreviated Journal |
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7 |
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1196-1198 |
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control region,Felidae,mitochondrial DNA,snow leopard,species-specific primers; genetics; development; mitochondrial; control; region; snow; snow leopard; snow-leopard; leopard; uncia |
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The snow leopard (Uncia uncia) is a rare carnivore living above the snow line in central Asia. Using universal primers for the mitochondrial genome control region hypervariable
region 1 (HVR1), we isolated a 411-bp fragment of HVR1 and then designed specific primers
near each end of this sequence in the conserved regions. These primers were shown to yield
good polymerase chain reaction products and to be species specific. Of the 12 snow leopards
studied, there were 11 segregating sites and six haplotypes. An identification case of snow
leopard carcass (confiscated by the police) proved the primers to be a useful tool for forensic
diagnosis in field and population genetics studies. |
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SLN @ rana @ 911 |
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1073 |
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Korablev, M. P., Poyarkov, A. D., Karnaukhov, A. S., Zvychaynaya, E. Y., Kuksin, A. N., Malykh, S. V., Istomov, S. V., Spitsyn, S. V., Aleksandrov, D. Y., Hernandez-Blanco, J. A., Munkhtsog, B., Munkhtogtokh, O., Putintsev, N. I., Vereshchagin, A. S., Becmurody, A., Afzunov, S., Rozhnov, V. V. |
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Large-scale and fine-grain population structure and genetic diversity of snow leopards (Panthera uncia Schreber, 1776) from the northern and western parts of the range with an emphasis on the Russian population. |
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Journal Article |
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2021 |
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Conservation Genetics |
Abbreviated Journal |
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Snow leopard, Panthera uncia, Microsatellites, Heterozygosity, Population structure, Noninvasive survey, Scat, Subspecies |
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The snow leopard (Panthera uncia Schreber, 1776) population in Russia and Mongolia is situated at the northern edge of the range, where instability of ecological conditions and of prey availability may serve as prerequisites for demographic instability and, consequently, for reducing the genetic diversity. Moreover, this northern area of the species distribution is connected with the western and central parts by only a few small fragments of potential habitats in the Tian-Shan spurs in China and Kazakhstan. Given this structure of the range, the restriction of gene flow between the northern and other regions of snow leopard distribution can be expected. Under these conditions, data on population genetics would be extremely important for assessment of genetic diversity, population structure and gene flow both at regional and large-scale level. To investigate large-scale and fine-grain population structure and levels of genetic diversity we analyzed 108 snow leopards identified from noninvasively collected scat samples from Russia and Mongolia (the northern part of the range) as well as from Kyrgyzstan and Tajikistan (the western part of the range) using panel of eight polymorphic microsatellites. We found low to moderate levels of genetic diversity in the studied populations. Among local habitats, the highest heterozygosity and allelic richness were recorded in Kyrgyzstan (He = 0.66 ± 0.03, Ho = 0.70 ± 0.04, Ar = 3.17) whereas the lowest diversity was found in a periphery subpopulation in Buryatia Republic of Russia (He = 0.41 ± 0.12, Ho = 0.29 ± 0.05, Ar = 2.33). In general, snow leopards from the western range exhibit greater genetic diversity (He = 0.68 ± 0.04, Ho = 0.66 ± 0.03, Ar = 4.95) compared to those from the northern range (He = 0.60 ± 0.06, Ho = 0.49 ± 0.02, Ar = 4.45). In addition, we have identified signs of fragmentation in the northern habitat, which have led to significant genetic divergence between subpopulations in Russia. Multiple analyses of genetic structure support considerable genetic differentiation between the northern and western range parts, which may testify to subspecies subdivision of snow leopards from these regions. The observed patterns of genetic structure are evidence for delineation of several management units within the studied populations, requiring individual approaches for conservation initiatives, particularly related to translocation events. The causes for the revealed patterns of genetic structure and levels of genetic diversity are discussed. |
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1633 |
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Atzeni, L., Cushman, S. A., Bai, D., Wang, J., Chen, P., Shi,
K., Riordan, P. |
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Meta-replication, sampling bias, and multi-scale model selection:
A case study on snow leopard (Panthera uncia) in western China. |
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2020 |
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Ecology and Evolution |
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1-27 |
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MaxEnt, meta-replication, multi-scale, Panthera uncia, sampling bias, scale selection, snow leopard, species distribution model |
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Replicated multiple scale species distribution models (SDMs)
have become increasingly important to identify the correct variables
determining species distribution and their influences on ecological
responses. This study explores multi-scale habitat relationships of the
snow leopard (Panthera uncia) in two study areas on the Qinghai–Tibetan
Plateau of western China. Our primary objectives were to evaluate the
degree to which snow leopard habitat relationships, expressed by
predictors, scales of response, and magnitude of effects, were
consistent across study areas or locally landcape-specific. We coupled
univariate scale optimization and the maximum entropy algorithm to
produce multivariate SDMs, inferring the relative suitability for the
species by ensembling top performing models. We optimized the SDMs based
on average omission rate across the top models and ensembles’ overlap
with a simulated reference model. Comparison of SDMs in the two study
areas highlighted landscape-specific responses to limiting factors.
These were dependent on the effects of the hydrological network,
anthropogenic features, topographic complexity, and the heterogeneity of
the landcover patch mosaic. Overall, even accounting for specific local
differences, we found general landscape attributes associated with snow
leopard ecological requirements, consisting of a positive association
with uplands and ridges, aggregated low-contrast landscapes, and large
extents of grassy and herbaceous vegetation. As a means to evaluate the
performance of two bias correction methods, we explored their effects on
three datasets showing a range of bias intensities. The performance of
corrections depends on the bias intensity; however, density kernels
offered a reliable correction strategy under all circumstances. This
study reveals the multi-scale response of snow leopards to environmental
attributes and confirms the role of meta-replicated study designs for
the identification of spatially varying limiting factors. Furthermore,
this study makes important contributions to the ongoing discussion about
the best approaches for sampling bias correction. |
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1616 |
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