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Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. |
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Title |
Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples |
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Journal Article |
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2014 |
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Conservation Genetic Resource |
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6 |
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2 |
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369:373 |
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Microsatellites,Cytochrome b, Snow Leopard, Noninvasive genetics, Individual identification |
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Abstract |
Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
endangered species |
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SLN @ rakhee @ |
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1427 |
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Author |
Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. |
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Title |
Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples |
Type |
Journal Article |
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Year |
2014 |
Publication |
Conservation Genetic Resource |
Abbreviated Journal |
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Volume |
6 |
Issue |
2 |
Pages |
369:373 |
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Keywords |
Microsatellites,Cytochrome b, Snow Leopard, Noninvasive genetics, Individual identification |
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Abstract |
Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species. |
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SLN @ rakhee @ |
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1428 |
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Korablev, M. P., Poyarkov, A. D., Karnaukhov, A. S., Zvychaynaya, E. Y., Kuksin, A. N., Malykh, S. V., Istomov, S. V., Spitsyn, S. V., Aleksandrov, D. Y., Hernandez-Blanco, J. A., Munkhtsog, B., Munkhtogtokh, O., Putintsev, N. I., Vereshchagin, A. S., Becmurody, A., Afzunov, S., Rozhnov, V. V. |
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Large-scale and fine-grain population structure and genetic diversity of snow leopards (Panthera uncia Schreber, 1776) from the northern and western parts of the range with an emphasis on the Russian population. |
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Journal Article |
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2021 |
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Conservation Genetics |
Abbreviated Journal |
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Snow leopard, Panthera uncia, Microsatellites, Heterozygosity, Population structure, Noninvasive survey, Scat, Subspecies |
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The snow leopard (Panthera uncia Schreber, 1776) population in Russia and Mongolia is situated at the northern edge of the range, where instability of ecological conditions and of prey availability may serve as prerequisites for demographic instability and, consequently, for reducing the genetic diversity. Moreover, this northern area of the species distribution is connected with the western and central parts by only a few small fragments of potential habitats in the Tian-Shan spurs in China and Kazakhstan. Given this structure of the range, the restriction of gene flow between the northern and other regions of snow leopard distribution can be expected. Under these conditions, data on population genetics would be extremely important for assessment of genetic diversity, population structure and gene flow both at regional and large-scale level. To investigate large-scale and fine-grain population structure and levels of genetic diversity we analyzed 108 snow leopards identified from noninvasively collected scat samples from Russia and Mongolia (the northern part of the range) as well as from Kyrgyzstan and Tajikistan (the western part of the range) using panel of eight polymorphic microsatellites. We found low to moderate levels of genetic diversity in the studied populations. Among local habitats, the highest heterozygosity and allelic richness were recorded in Kyrgyzstan (He = 0.66 ± 0.03, Ho = 0.70 ± 0.04, Ar = 3.17) whereas the lowest diversity was found in a periphery subpopulation in Buryatia Republic of Russia (He = 0.41 ± 0.12, Ho = 0.29 ± 0.05, Ar = 2.33). In general, snow leopards from the western range exhibit greater genetic diversity (He = 0.68 ± 0.04, Ho = 0.66 ± 0.03, Ar = 4.95) compared to those from the northern range (He = 0.60 ± 0.06, Ho = 0.49 ± 0.02, Ar = 4.45). In addition, we have identified signs of fragmentation in the northern habitat, which have led to significant genetic divergence between subpopulations in Russia. Multiple analyses of genetic structure support considerable genetic differentiation between the northern and western range parts, which may testify to subspecies subdivision of snow leopards from these regions. The observed patterns of genetic structure are evidence for delineation of several management units within the studied populations, requiring individual approaches for conservation initiatives, particularly related to translocation events. The causes for the revealed patterns of genetic structure and levels of genetic diversity are discussed. |
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1633 |
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Robinson, J. J., Crichlow, A. D., Hacker, C. E., Munkhtsog, B., Munkhtsog, B., Zhang, Y., Swanson, W. F., Lyons, L. A., Janecka, J. E. |
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Title |
Genetic Variation in the Pallas’s Cat (Otocolobus manul) in Zoo-Managed and Wild Populations |
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Journal Article |
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2024 |
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Diversity |
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16 |
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228 |
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1-13 |
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Otocolobus manul; microsatellites; zoo-managed population; mitochondrial 12S ribosomal RNA; endothelial PAS domain protein 1 |
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The Pallas’s cat (Otocolobus manul) is one of the most understudied taxa in the Felidae family. The species is currently assessed as being of “Least Concern” in the IUCN Red List, but this assessment is based on incomplete data. Additional ecological and genetic information is necessary for the long-term in situ and ex situ conservation of this species. We identified 29 microsatellite loci with sufficient diversity to enable studies into the individual identification, population structure, and phylogeography of Pallas’s cats. These microsatellites were genotyped on six wild Pallas’s cats from the Tibet Autonomous Region and Mongolia and ten cats from a United States zoo-managed population that originated in Russia and Mongolia. Additionally, we examined diversity in a 91 bp segment of the mitochondrial 12S ribosomal RNA (MT-RNR1) locus and a hypoxia-related gene, endothelial PAS domain protein 1 (EPAS1). Based on the microsatellite and MT-RNR1 loci, we established that the Pallas’s cat displays moderate genetic diversity. Intriguingly, we found that the Pallas’s cats had one unique nonsynonymous substitution in EPAS1 not present in snow leopards (Panthera uncia) or domestic cats (Felis catus). The analysis of the zoo-managed population indicated reduced genetic diversity compared to wild individuals. The genetic information from this study is a valuable resource for future research into and the conservation of the Pallas’s cat. |
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1749 |
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Waits, L.P.; Buckley-Beason, V.A.; Johnson, W.E.; Onorato, D.; McCarthy, T. |
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A select panel of polymorphic microsatellite loci for individual identification of snow leopards (Panthera uncia)
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Miscellaneous |
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2006 |
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Molecular Ecology Notes |
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7 |
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311-314 |
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Keywords |
identification; leopard; leopards; microsatellites,noninvasive genetic sampling,Panthera uncia,snow leopard; panthera; Panthera-uncia; panthera uncia; snow; snow-leopard; snow-leopards; snow leopard; snow leopards; uncia; endangered; carnivores; carnivore; mountain; region; central; Central Asia; asia; methods; conservation; management; Molecular; individual identification; Hair; domestic; cat; felis; captive; number; probability; using; wild |
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Snow leopards (Panthera uncia) are elusive endangered carnivores found in remote mountain regions of Central Asia. New methods for identifying and counting snow leopards are needed for conservation and management efforts. To develop molecular genetic tools for individual identification of hair and faecal samples, we screened 50 microsatellite loci developed for the domestic cat (Felis catus) in 19 captive snow leopards. Forty-eight loci were polymorphic with numbers of alleles per locus ranging from two to 11. The probability of observing matching genotypes for unrelated individuals (2.1 x10-11) and siblings (7.5x10-5) using the 10 most polymorphic loci was low, suggesting that this panel would easily discriminate among individuals in the wild. |
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SLN @ rana @ 865 |
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1001 |
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