Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. (2014). Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples. Conservation Genetic Resource, 6(2), 369:373.
Abstract: Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
endangered species
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Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J. (2014). Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples. Conservation Genetic Resource, 6(2), 369:373.
Abstract: Molecular markers that can effectively identify noninvasively collected samples and provide genetic
information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many
noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the
domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard
populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and
population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers
facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
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Janjua, S., Peters, J. L., Weckworth, B., Abbas, F. I., Bahn, Volker, Johansson, O., Rooney, T.P. (2019). Improving our conservation genetic toolkit: ddRAD-seq for SNPs in snow leopards. Conservation Genetic Resource, .
Abstract: Snow leopards (Panthera uncia) are an enigmatic, high-altitude species whose challenging habitat, low population densities
and patchy distribution have presented challenges for scientists studying its biology, population structure, and genetics.
Molecular scatology brings a new hope for conservation efforts by providing valuable insights about snow leopards, including
their distribution, population densities, connectivity, habitat use, and population structure for assigning conservation units.
However, traditional amplification of microsatellites from non-invasive sources of DNA are accompanied by significant
genotyping errors due to low DNA yield and poor quality. These errors can lead to incorrect inferences in the number of
individuals and estimates of genetic diversity. Next generation technologies have revolutionized the depth of information
we can get from a species' genome. Here we used double digest restriction-site associated DNA sequencing (ddRAD-seq),
a well-established technique for studying non-model organisms, to develop a reference sequence library for snow leopards
using blood samples from five Mongolian individuals. Our final data set reveals 4504 loci with a median size range of 221 bp.
We identified 697 SNPs and low nucleotide diversity (0.00032) within these loci. However, the probability that two random
individuals will share identical genotypes is about 10-168. We developed probes for DNA capture using this sequence library
which can now be used for genotyping individuals from scat samples. Genetic data from ddRAD-seq will be invaluable for
conducting population and landscape scale studies that can inform snow leopard conservation strategies.
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