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	Author	Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J.
	Title	Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples			Type	Journal Article
	Year	2014	Publication	Conservation Genetic Resource	Abbreviated Journal
	Volume	6	Issue	2	Pages	369:373
	Keywords	Microsatellites,Cytochrome b, Snow Leopard, Noninvasive genetics, Individual identification
	Abstract	Molecular markers that can effectively identify noninvasively collected samples and provide genetic information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species.
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	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	SLN @ rakhee @			Serial	1428
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	Author	Janecka, J. E., Jackson, R., Munkhtsog, B., Murphy, W. J.
	Title	Characterization of 9 microsatellites and primers in snow leopards and a species-specific PCR assay for identifying noninvasive samples			Type	Journal Article
	Year	2014	Publication	Conservation Genetic Resource	Abbreviated Journal
	Volume	6	Issue	2	Pages	369:373
	Keywords	Microsatellites,Cytochrome b, Snow Leopard, Noninvasive genetics, Individual identification
	Abstract	Molecular markers that can effectively identify noninvasively collected samples and provide genetic information are critical for understanding the distribution, status, and ecology of snow leopards (Panthera uncia). However, the low DNA quantity and quality in many noninvasive samples such as scats makes PCR amplification and genotyping challenging. We therefore designed primers for 9 microsatellites loci previously isolated in the domestic cat (Felis catus) specifically for snow leopard studies using noninvasive samples. The loci showed moderate levels of variation in two Mongolian snow leopard populations. Combined with seven other loci that we previously described, they have sufficient variation (He = 0.504, An = 3.6) for individual identification and population structure analysis. We designed a species species specific PCR assay using cytochrome b for identification of unknown snow leopard samples. These molecular markers facilitate in depth studies to assess distribution, abundance, population structure, and landscape connectivity of this endangered species. endangered species
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	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	SLN @ rakhee @			Serial	1427
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	Author	Aruge, S., Batool, H., Khan, F. M., Abbas, F. I., Janjua, S
	Title	A pilot study�genetic diversity and population structure of snow leopards of Gilgit-Baltistan, Pakistan, using molecular techniques.			Type	Journal Article
	Year	2019	Publication	PeerJ	Abbreviated Journal
	Volume		Issue	7672	Pages	1-14
	Keywords	Population, Genetics, Panthera uncia, Pakistan, Molecular markers
	Abstract	Background: The Hindu Kush and Karakoram mountain ranges in Pakistan�s northern areas are a natural habitat of the snow leopard (Panthera uncia syn. Uncia uncia) but the ecological studies on this animal are scarce since it is human shy by nature and lives in dif!cult mountainous tracts. The pilot study is conducted to exploit the genetic diversity and population structure of the snow leopard in this selected natural habitat of the member of the wildcat family in Pakistan. Method: About 50 putative scat samples of snow leopard from !ve localities of Gilgit-Baltistan (Pakistan) along with a control sample of zoo maintained male snow leopard were collected for comparison. Signi!cant quality and quantity of genomic DNA was extracted from scat samples using combined Zhang�phenol�chloroform method and successful ampli!cation of cytochrome c oxidase I gene (190 bp) using mini-barcode primers, seven simple sequence repeats (SSR) markers and Y-linked AMELY gene (200 bp) was done. Results: Cytochrome c oxidase I gene sequencing suggested that 33/50 (66%) scat samples were of snow leopard. AMELY primer suggested that out of 33 ampli!ed samples, 21 (63.63%) scats were from male and 12 (36.36%) from female leopards. Through successful ampli!cation of DNA of 25 out of 33 (75.75%) scat samples using SSR markers, a total of 68 alleles on seven SSR loci were identi!ed, showing low heterozygosity, while high gene "ow between population. Discussion: The low gene flow rate among the population results in low genetic diversity causing decreased diversi!cation. This affects the adaptability to climatic changes, thus ultimately resulting in decreased population size of the species.
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	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Notes				Approved	no
	Call Number	SLN @ rakhee @			Serial	1491
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	Author	Atzeni, L., Wang, J., Riordan, P., Shi, K., Cushman, S. A.
	Title	Landscape resistance to gene flow in a snow leopard population from Qilianshan National Park, Gansu, China			Type	Journal Article
	Year	2023	Publication	Landscape Ecology	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Landscape genetics · MLPE · Gene flow · Genetic distance · Isolation by distance · Isolation by resistance · Landscape resistance · Snow leopard · Principal component analysis
	Abstract	Context: The accurate estimation of landscape resistance to movement is important for ecological understanding and conservation applications. Rigorous estimation of resistance requires validation and optimization. One approach uses genetic data for the optimization or validation of resistance models. Objectives We used a genetic dataset of snow leopards from China to evaluate how landscape genetics resistance models varied across genetic distances and spatial scales of analysis. We evaluated whether landscape genetics models were superior to models of resistance derived from habitat suitability or isolation-by-distance. Methods: We regressed genetically optimized, habitat-based, and isolation-by-distance hypotheses against genetic distances using mixed effect models. We explored all subset combinations of genetically optimized variables to find the most supported resistance scenario for each genetic distance. Results: Genetically optimized models always out-performed habitat-based and isolation-by-distance hypotheses. The choice of genetic distances influenced the apparent influence of variables, their spatial scales and their functional response shapes, producing divergent resistance scenarios. Gene flow in snow leopards was largely facilitated by areas of intermediate ruggedness at intermediate elevations corresponding to small-to-large valleys within and between the mountain ranges. Conclusions: This study highlights that landscape genetics models provide superior estimation of functional dispersal than habitat surrogates and suggests that optimization of genetic distance should be included as an optimization routine in landscape genetics, along with variables, scales, effect size and functional response shape. Furthermore, our study provides new insights on the ecological conditions that promote gene flow in snow leopards, which expands ecological knowledge, and we hope will improve conservation planning.
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	Publisher		Place of Publication		Editor
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	Notes				Approved	no
	Call Number	SLN @ rakhee @			Serial	1720
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	Author	Hacker, C., Atzeni, L., Munkhtsog, B., Munkhtsog, B., Galsandorj, N., Zhang, Y., Liu, Y., Buyanaa, C., Bayandonoi, G., Ochirjav, M., Farrington, J. D., Jevit, M., Zhang, Y., Wu, L. Cong, W., Li, D., Gavette, C., Jackson, R., Janecka, J. E.
	Title	Genetic diversity and spatial structures of snow leopards (Panthera uncia) reveal proxies of connectivity across Mongolia and northwestern China			Type	Journal Article
	Year	2022	Publication	Landscape Ecology	Abbreviated Journal
	Volume		Issue		Pages	1-19
	Keywords	Admixture · Central Asia · Connectivity · Habitat Modeling · Landscape Genetics · Noninvasive Genetics · MEM · Spatial Structures
	Abstract	Understanding landscape connectivity and population genetic parameters is imperative for threatened species management. However, such information is lacking for the snow leopard (Panthera uncia). This study sought to explore hierarchical snow leopard gene flow patterns and drivers of genetic structure in Mongolia and China. A total of 97 individuals from across Mongolia and from the north-eastern edge of the Qinghai-Tibetan Plateau in Gansu Province to the middle of Qinghai Province in China were genotyped across 24 microsatellite loci. Distance-based frameworks were used to determine a landscape scenario best explaining observed genetic structure. Spatial and non-spatial methods were used to investigate fine-scale autocorrelation and similarity patterns as well as genetic structure and admixture. A genetic macro-division between populations in China and Mongolia was observed, suggesting that the Gobi Desert is a substantial barrier to gene flow. However, admixture and support for a resistance-based mode of isolation suggests connective routes that could facilitate movement. Populations in Mongolia had greater connectivity, indicative of more continuous habitat. Drivers of genetic structure in China were difficult to discern, and fine-scale sampling is needed. This study elucidates snow leopard landscape connectivity and helps to prioritize conservation areas. Although contact zones may have existed and occasional crossings can occur, establishing corridors to connect these areas should not be a priority. Focus should be placed on maintaining the relatively high connectivity for snow leopard populations within Mongolia and increasing research efforts in China.
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	Notes				Approved	no
	Call Number	SLN @ rakhee @			Serial	1717
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	Author	Zhang, F.; Jiang, Z.; Zeng, Y.; McCarthy, T.
	Title	Development of primers to characterize the mitochondrial control region of the snow leopard (Uncia uncia)			Type	Miscellaneous
	Year	2007	Publication	Molecular Ecology Notes	Abbreviated Journal
	Volume	7	Issue		Pages	1196-1198
	Keywords	control region,Felidae,mitochondrial DNA,snow leopard,species-specific primers; genetics; development; mitochondrial; control; region; snow; snow leopard; snow-leopard; leopard; uncia
	Abstract	The snow leopard (Uncia uncia) is a rare carnivore living above the snow line in central Asia. Using universal primers for the mitochondrial genome control region hypervariable region 1 (HVR1), we isolated a 411-bp fragment of HVR1 and then designed specific primers near each end of this sequence in the conserved regions. These primers were shown to yield good polymerase chain reaction products and to be species specific. Of the 12 snow leopards studied, there were 11 segregating sites and six haplotypes. An identification case of snow leopard carcass (confiscated by the police) proved the primers to be a useful tool for forensic diagnosis in field and population genetics studies.
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	Notes				Approved	no
	Call Number	SLN @ rana @ 911			Serial	1073
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	Author	Wildt, D.; Pukazhenthi, B.; Brown, J.; Monfort, S.; Howard, J.; Roth, T.
	Title	Spermatology for understanding, managing and conserving rare species			Type	Journal Article
	Year	1995	Publication	Reproduction Fertility and Development	Abbreviated Journal
	Volume	7	Issue	4	Pages	811-824
	Keywords	Assisted-Reproduction; Cryopreservation; reproduction; zoo; medical; veterinary; spermatology; genetics; browse; assisted; 1380
	Abstract	Most conventional spermatology research involves common mammalian species including livestock, laboratory animals and humans. Yet, there are more than 4500 mammalian species inhabiting the planet for which little is known about basic reproductive biology, including sperm characteristics and function. This information is important, not just as adjunct knowledge, but because the majority of these species are threatened with extinction, largely due to human-induced pressures. The field of conservation is changing rapidly, and global cooperation is emerging among a variety of wildlife enthusiasts, ranging from management authorities of nature reserves to curators of rare zoological collections. Conservation progress depends on systematic, multidisciplinary research first to answer basic questions, with new data then applied to endangered species management plans. The reproductive physiologist is a crucial component of this scheme. Reproduction is the essence of species survival, and enormous effort needs to be directed at these 'untraditional' research species, subspecies and populations. Spermatology research combined with simultaneous efforts in endocrinology, embryology and cryopreservation (among others) can lead to the successful application of assisted reproduction. Examples from this laboratory include an array of wild felid species and a rare cervid and mustelid. Obstacles to success are formidable, including unique species-specificities, diminished genetic diversity and a general lack of resources. Nonetheless, the field offers tremendous opportunities for generating unique knowledge of comparative interest and with conservation utility.
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	Notes	Document Type: English			Approved	no
	Call Number	SLN @ rana @ 278			Serial	1024
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	Author	Warren E.Johnson, E.E.
	Title	The Late Miocene Radiation of Modern Felidae: A Genetic Assessment			Type	Miscellaneous
	Year	2006	Publication	Science	Abbreviated Journal
	Volume	311	Issue		Pages	73-77
	Keywords	classification; divergence; Dna; Felidae; genetics; Miocene; mitochondrial; phylogeny; radiation; species; taxonomic
	Abstract	Modern felid species descend from relatively recent (<11 million years ago) divergence and speciation events that produced successful predatory carnivores worldwide but that have confounded taxonomic classifications. A highly resolved molecular phylogeny with divergence dates for all living cat species, derived from autosomal, X-linked, Y-linked, and mitochondrial gene segments (22,789 base pairs) and 16 fossil calibrations define eight principal lineages produced through at least 10 intercontinental migrations facilitated by sea-level fluctuations. A ghost lineage analysis indicates that available felid fossils underestimate (i.e., unrepresented basal branch length) first occurrence by an average of 76%, revealing a low representation of felid lineages in paleontological remains. The phylogenetic performance of distinct gene classes showed that Y-chromosome segments are appreciably more informative than mitochondrial DNA, X-linked, or autosomal genes in resolving the rapid Felidae species radiation.
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	Publisher		Place of Publication	Washington D.C.	Editor	Jill Pecon-Slattery, W.J.M., Agostinho Antunes, Emma Teeling, Stephen J.O'Brien
	Language		Summary Language		Original Title
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	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
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	Notes				Approved	no
	Call Number	SLN @ rana @ 880			Serial	1008
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	Author	Trepanier, L.A.; Cribb, A.E.; Spielberg, S.P.; Ray, K.
	Title	Deficiency of cytosolic arylamine N-acetylation in the domestic cat and wild felids caused by the presence of a single NAT1-like gene			Type	Journal Article
	Year	1998	Publication	Pharmacogenetics	Abbreviated Journal
	Volume	8	Issue	2	Pages	169-179
	Keywords	Acetylation; Amino; Acid; Sequence; Animal; Arylamine; N-Acetyltransferase; metabolism; Base; Blotting; Southern; Carnivora; genetics; Cats; Cytosol; enzymology; Dna; Human; Isoenzymes; Liver; Molecular; Data; Polymerase; Chain; Reaction; Rabbits; Homology; Nucleic Acid; Substrate; Specificity; Support; U.S.Gov't; P.H.S.; browse; nucleic; us; government; 130
	Abstract	The purpose of this study was to determine the molecular basis for a relative deficiency in the cat of cytosolic arylamine N- acetyltransferase (NAT), an enzyme family that is important in the metabolism of xenobiotics and that normally consists of at least two related enzymes, NAT1 and NAT2. N-acetyltransferase in feline liver showed high affinity (mean Km = 2.1 microM) for p-aminobenzoic acid, an NAT1 selective substrate in humans and rabbits, but showed a very poor affinity (mean Km > 10 mM) for sulfamethazine, an NAT2 selective substrate in humans and rabbits. Immunoreactive N-acetyltransferase was detected in feline liver, bladder and colon using an NAT1-specific antipeptide antibody, but was not detected in any tissues using an NAT2- specific antibody. Southern blot analysis of genomic DNA demonstrated a single band in domestic cats using each of six restriction digests; single bands were also found on Southern blot analysis of six wild felids. The deduced amino acid sequence of the central portion of feline N-acetyltransferase, obtained by polymerase chain reaction amplification in both domestic cats and seven wild felids (lion, tiger, lynx, snow leopard, bobcat, Asian leopard cat and cheetah), contained three residues, Phe125, Arg127, and Tyr129, which determine NAT1-like substrate specificity in humans. These results support the conclusion that cytosolic arylamine N-acetylation activity is low in the cat because of the presence of a single N-acetyltransferase that has substrate specificity, immunogenicity and sequence characteristics similar to human NAT1, and that the unusual presence of only a single N- acetyltransferase gene appears to be a family wide trait shared by other felids.
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	Publisher		Place of Publication		Editor
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	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0960-314x	ISBN		Medium
	Area		Expedition		Conference
	Notes	Document Type: eng			Approved	no
	Call Number	SLN @ rana @ 345			Serial	968
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	Author	Roth, T.L.; Swanson, W.F.; Wildt, D.E.
	Title	Snow leopard (Panthera unica) sperm longevity in vitro is not influenced by protein or energy source supplements but is affected by buffer source			Type	Journal Article
	Year	1995	Publication	Theriogenology	Abbreviated Journal
	Volume	43	Issue	1	Pages	309
	Keywords	genetics; Sperm; captivity; medical; medicine; veterinary; zoo; breeding; browse; 1400
	Abstract
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	Notes	Annual Conference of the International Embryo Transfer Society, Calgary, Alberta, Canada, January 8-10, 1995 Document Type: English Call Number: QP251 .T44			Approved	no
	Call Number	SLN @ rana @ 280			Serial	829
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